Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 172 8e-38 seq25 129 9e-25 >seq18 Length=496665 Score = 172 bits (190), Expect = 8e-38 Identities = 334/485 (69%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 |||||||| || || || || |||||| | | ||||| |||| || |||||||| ||| Sbjct 377818 CAGGGCGGAAACAAGCGCCCCGGCGCTTTCTGCATCTACCTGGAGCCGTGGCACGCCGAC 377759 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| ||||||| ||| ||| || ||| || ||| | || Sbjct 377758 GTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGCGCCCGTGAT 377699 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || ||| | || ||| |||||||||||||||| | | ||| | Sbjct 377698 CTGTTCATGGCTCTGTGGATACCTGATCTGTTCATGAAGCGCGTGGAGAAGAACGGCACC 377639 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| | || || || ||| |||| |||| ||||| ||||| Sbjct 377638 TGGACGCTCATGTGCCCTAGCGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTC 377579 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 || ||| |||| |||||| | |||||||| || | || | || | || | Sbjct 377578 GAAGCCCTGTACGAAAAGTACGAGAAGGAGGGCCGTGGCCGCGGCACCA-TCAAGGCTC- 377521 Query 97175 AGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| |||||| | |||| || ||| ||| ||| ||||| || | || | ||| || Sbjct 377520 AGAAGCTGTGGTATGCCATTCTTGA-GGCCCAGACCGAGACCGGCAACCCCTTCATGCTG 377462 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 |||||||| | || ||||| |||||||| |||||||||||||| ||||| Sbjct 377461 TACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGCACCATCCGCAGCTCC 377402 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 || |||||||||| ||||| |||||| | | || |||||| || || ||| ||| Sbjct 377401 AACTTGTGCACGGAGATTGTCGAGTACTCGGCCCCTGACGAGGTCGCTGTCTGCAACCTG 377342 Query 97353 GCATC 97357 || || Sbjct 377341 GCCTC 377337 >seq25 Length=315089 Score = 129 bits (142), Expect = 9e-25 Identities = 203/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| | || ||| Sbjct 43911 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACTGCCGAGGAGATTGACCTG 43852 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || | || ||| | | ||| ||| || ||||| | || | || Sbjct 43851 TCCAAGGATCTCCATGACTGGAACAACCGTATGAACGATGACGAGCGCTACTTCGTCTCC 43792 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| |||| |||||||||| ||| || || || |||||||| || ||| | || Sbjct 43791 CACATCCTGGCGTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCGC 43732 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| | ||| | ||| | || |||| ||||| ||||| ||||| ||||||| Sbjct 43731 TTCAGTGGCGAG--GTCCAAGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 43674 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | |||||| | |||||||| | ||||| || ||||||| ||||| Sbjct 43673 TGGAGAACATCCACTCGGAGACCTACTCCCTCCTCATTGACACCTACAT 43625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058458940800