Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 111 4e-19 >seq12 Length=2460794 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || ||||| ||||| | || || || ||||| || |||||||| Sbjct 54670 TCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAG 54611 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || || ||||||||||| | || ||||| Sbjct 54610 ATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 54551 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || ||| ||||| || || || ||||| || || || || || ||| Sbjct 54550 TCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACA 54491 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 54490 AAGATCTGCAT 54480 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || | ||||| || || || || ||||| ||| Sbjct 54442 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAA 54383 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||||||||| || || || || || || ||||||||||| | || ||||| Sbjct 54382 ATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 54323 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || | || ||||| || || || ||||| || ||||| || || || Sbjct 54322 TCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACG 54263 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 54262 AAGATCTGCATATTG 54248 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | ||||| || ||||| || || |||||| || || | Sbjct 55153 AGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGG 55094 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || ||||||||||| || || | | ||| || || || || || || || Sbjct 55093 CCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCC 55034 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||||||||| | || || || || | || || || || ||||| || || Sbjct 55033 TTGTCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTG 54974 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || || || || || ||||| Sbjct 54973 ATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397219816640