Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 3e-13 seq31 82.4 5e-11 >seq13 Length=672118 Score = 89.7 bits (98), Expect = 3e-13 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 44368 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCG-T 44426 |||||||||| || || | || ||| | ||| |||| |||||||||||||||||| Sbjct 570791 CGTCAAGGTGCGGGTGCGCACGACCAAGATCCCGCAGATCGGCGACAAGTTTGCGTCGCG 570732 Query 44427 TCACGGCGCAAAAGGGGA-CAT-GCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 44484 ||||| ||||||||| | ||| | | | ||| | | || || ||||||||||| Sbjct 570731 CCACGG-GCAAAAGGGCACCATCGGCGTGACGTACCGCTCC--GAAGACATGCCCTTTAC 570675 Query 44485 CAAAAACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 44544 || | || | ||||||| ||||||||||||| |||||| | ||||| | ||||| Sbjct 570674 CACGGAGGGCATCACGCCCGACATCATCATCAACCCGCACGCCATCCCCTCGCGCATGAC 570615 Query 44545 C 44545 | Sbjct 570614 C 570614 >seq31 Length=224113 Score = 82.4 bits (90), Expect = 5e-11 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 44394 GGCACCCAGAGATGGGCGACAAGTTTGCGTCGTTC-ACGGCGCAAAAGGG-GACATGCGG 44451 ||| ||| ||||| ||||||||||| ||||| | ||||| |||||||| | | | ||| Sbjct 198746 GGCGCCCCGAGATCGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGCGTCGT-CGG 198803 Query 44452 AGCCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCAT 44511 | || | |||||||||||||||||| | | | ||| ||| |||||| | || Sbjct 198804 CATCATCGTCGACCAGGAGGACATGCCCTTTAGCGACAGCGGCGTGTGCCCCGACATGAT 198863 Query 44512 CATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 44547 ||| ||||| |||| || ||||| | |||||||| Sbjct 198864 CATGAACCCGCACGGCTACCCCTCGCGCATGACCGT 198899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137268365840