Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq12 109 5e-19 >seq12 Length=2460794 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | || ||| | ||||| ||||||||||||||||||||||| || Sbjct 54707 ACCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCT 54648 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || | |||||||| ||||| || | | || | |||||||| || || Sbjct 54647 CAGAGTG-CGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCG 54589 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| ||| ||| ||||| | | |||||||| | ||| ||| Sbjct 54588 GGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCA 54529 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || ||||| ||||| || ||||| |||||||| Sbjct 54528 CCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| |||||||||||||| |||||||| ||| | | || || | ||||||||||| Sbjct 54910 TGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCA-CTGAGGGTACGGCCATCCTCCAGCTG 54852 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || || |||||||| || ||| | | |||||||| || || Sbjct 54851 CTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTGGATCTT 54792 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | |||||||| | ||||||| ||| | || || || || ||||| Sbjct 54791 CGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCGGT 54732 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| |||||||| Sbjct 54731 CAGAGTCTTGACAAAGATCTGCAT 54708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| | ||| || ||||||||||| || |||||||| || || Sbjct 54479 ACCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 54421 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || ||||||| |||||||| || || |||| | ||||| ||||| | Sbjct 54420 TCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGG 54361 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| ||| ||| ||||| | | ||||| || | ||||| Sbjct 54360 GAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAA 54301 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| || || || || || |||||||| Sbjct 54300 CCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 54252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250789280080