Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq12 107 2e-18 >seq12 Length=2460794 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||||| ||||| ||||| || | ||| || || || | || | | Sbjct 55150 CGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCA 55091 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||||||||| | ||||| || | ||||| ||||| ||||| || || ||| Sbjct 55090 TCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTG 55031 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || | ||| ||| | ||| ||||| | || || || | |||||| Sbjct 55030 TCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATC 54971 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| || || || || || ||||||| Sbjct 54970 GTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCATGC 54934 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||| |||||||| | ||| || ||||||| |||| | |||||| Sbjct 54689 CACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 54630 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||| || || || ||||||| | | ||||| ||||| || || || || ||||| | Sbjct 54629 CAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTG 54570 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | |||||| | ||| || || | || || || | |||||| || || Sbjct 54569 AATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTCTT 54510 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || |||||||||||||| Sbjct 54509 GCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | || |||| ||||| ||| | ||| |||||||| | | Sbjct 54946 AAAATTTGCATGCCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATG 54887 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || | || | |||||||||||| |||||| | ||||| || | ||| Sbjct 54886 TTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGC 54827 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| ||||| || || ||||| | || || | ||| ||| | | | || || Sbjct 54826 TGGTCTGGCGGAATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCC 54767 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||| || || || || ||||| || |||||||||||||| Sbjct 54766 GAAGACTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||||||| ||| | ||||| ||||| || || | || Sbjct 54442 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAA 54383 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | || |||||||| ||||| || || ||||| | ||| || | |||||| | Sbjct 54382 ATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 54323 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||||| || || || | |||||||| || || ||||| || || || Sbjct 54322 TCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACG 54263 Query 94997 AAGATCTGCAT 95007 ||||||||||| Sbjct 54262 AAGATCTGCAT 54252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290751708800