Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 185 1e-42 seq48 105 1e-18 >seq8 Length=781029 Score = 185 bits (204), Expect = 1e-42 Identities = 207/274 (76%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| ||| || || ||||| || || ||||||||||| ||||| Sbjct 281002 GCCAAGCGCCACCGGAAGAT-TCTCCGTGACAACATTCAGGGTATCACCAAGCCCGCTAT 281060 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||| || ||||||||| |||||| || |||| || |||| Sbjct 281061 TCGTCGTCTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGCCATGATCTACGAGGAGAC 281120 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | ||| |||||| || ||| |||| ||| ||| || ||| || || Sbjct 281121 CCGTGGTGTTCTCAAGTCCTTCCTGGAGGGCGTCATCCGTGACGCTGTCACCTACACTGA 281180 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || ||||||| || | || || || || Sbjct 281181 GCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTCGTCTACGCGCTCAAGCGCCAGGG 281240 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||||| | || |||||||| ||||| || || Sbjct 281241 CCGTACCCTGTACGGTTTTGGTGGTTAAGCTGCT 281274 >seq48 Length=99097 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| | ||| |||||| || ||||| || || || || ||||| |||| Sbjct 2691 CGCCAAGCGTCATCGGAAGAT-TCTTCGTGACAACATTCAGGGCATTACGAAGCCGGCTA 2633 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| |||||||| ||||||||||| ||||||||| |||||| Sbjct 2632 TCCGGCGTCTGGCCCGTCGTGGTGGTGTCAAGCGTATCTCTG 2591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075126855440