Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq18 289 7e-73 >seq18 Length=496665 Score = 289 bits (320), Expect = 7e-73 Identities = 1050/1628 (64%), Gaps = 30/1628 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || || | | ||| || || || | | | ||| |||| || Sbjct 378088 TTCACTCACGCCTCACCCACGCTTTTCAACGCCGGTACGCCGCAGGCTCAGCTGTCGTCG 378029 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | || |||||||| ||||||||| || | ||||| || |||| Sbjct 378028 TGCTTCCTGGTCGACATCAAGGACGACAGCATCGAGGGCATTTACGACACCCTCAAGACC 377969 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 ||||| | |||||||||| || ||||| ||||| | || ||| | ||||| Sbjct 377968 TGTGCCATGATTTCCAAGACGGCTGGCGGCATTGGCCTCAACATACACCGCATCCGTGCC 377909 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 |||| | | ||||| |||||| || ||| || || | | |||||||| || Sbjct 377908 ACAGGATCCT-ACATTGCCGGCACCAACGGCACCTCCAACGGCATCATCCCCATGCTGCG 377850 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || |||| || || | |||||||||||||| ||| |||||| || || || Sbjct 377849 CGTCTTCAACAACACGGCTCGCTACGTCGACCAGGGCGGAAACAAGCGCCCCGGCGCTTT 377790 Query 363846 -TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 ||| || || || ||||| || ||||| | |||||||| || || || || || | Sbjct 377789 CTGC-ATCTACCTGGAGCCGTGGCACGCCGACGTCTTTGAGTTCCTCGACCTGCGCAAGA 377731 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | || || |||||||||||| || || ||| | |||| | Sbjct 377730 ACCACGGCAAGGAGGAGATCCGCGCCCGTGATCTGTTCATGGCTCTGTGGATACCTGATC 377671 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022 || ||||||||||||||| | | | | | ||| | ||| | ||||| ||| || Sbjct 377670 TGTTCATGAAGCGCGTGGAG--AAGAACGGCACCTGGACGCTCATGTGCCCTAGCGAGTG 377613 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || || |||| | || || || | | || || ||||||||||| || Sbjct 377612 CCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTCGAAGCCCTGTACGAAAAGTACGAGAA 377553 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 |||||| | || || || || |||||||| |||| |||||| | || | Sbjct 377552 GGAGGGCCGTGGCCGCGGCACCATCAAGGCTCAGAAGCTGTGGTATGCCATTCTTGAGGC 377493 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| ||||| || | |||| ||| ||||||| || |||||||||||| ||| Sbjct 377492 CCAGACCGAGACCGGCAACCCCTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAA 377433 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || || | || || | || |||| |||| | || || |||||| | || ||| Sbjct 377432 CCAGAAGAACTTGGGCACCA-TCCGCAGCTCCAACTTGTGCACGGAGATTGTCGAGTACT 377374 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT--TGT 364319 | || || |||||| || || || ||||| || || || || || ||||| || || Sbjct 377373 CGGCCCCTGACGAGGTCGCTGTCTGCAACCTGGCCTCCATTGCCCTGCCGGCTTTCGTGG 377314 Query 364320 AAAAG----ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTAC 364373 | || | | | ||| | || || | || || ||| | || | | | Sbjct 377313 ACCAGTCCAACCAGAGCTACGACTTCAAGGCCCTGCACGATGTGACCAAGGTCGTTGTGC 377254 Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AG 364428 |||| || || | || ||| || || || || | || || || || || Sbjct 377253 --GCAACCTGAACCGCATCATTGACGTCAACTACTACCCGGTGCCCGAGGCTCGCAACAG 377196 Query 364429 CGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTT 364488 | || ||||| || || || |||||| | ||| | |||||||| ||||| | ||| Sbjct 377195 C-----AACATGCGCCACCGTCCCATTGGTGTGGGTATCCAGGGCCTGGCTGATGCCTTT 377141 Query 364489 ATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTT 364548 || ||| ||| ||||||| ||||| || || || || || | ||||||| Sbjct 377140 TTGGCGCTGCGCATGCCATTTGAGTCGCCCGAGGCGCGCAAGCTCAACATCCAGATCTTC 377081 Query 364549 GAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAG 364608 || || || || || || | | ||| | || |||| | | | |||| Sbjct 377080 GAGACCATCTACCACGCTGCTCTCGAGACCTCGAGCGAGCTGGCCGAGATCGAGGGCGTC 377021 Query 364609 TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAAT 364668 ||| | | || ||||| || ||| | |||||||| | | ||| || | |||||| Sbjct 377020 TACGCGTCGTACGAGGGCTCGCCTGTGTCGCAGGGCATCCTGCAGCCGGACATGTGGAAT 376961 Query 364669 GTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGT 364728 |||||||| || | | ||| ||||| | ||| ||| |||| | |||||||| || Sbjct 376960 GTCACGCCCTCGGATCTGTGGGACTGGACTGAGCTGCGTGCCAAGATCAAGAAGCACGGC 376901 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 | |||||| || | | ||||||||||| ||||| || || |||||||||| || Sbjct 376900 ATCCGCAACAGTCTGCTGATGGCGCCCATGCCGACGGCCTCGACGTCACAGATCCTGGGC 376841 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 |||||||||||||| || || | || ||| |||| ||||| || || |||| Sbjct 376840 AACAACGAGTGCTTTGAGCCCTACACCTCCAACATTTACCAGCGCCGTGTGCTGGCCGGC 376781 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 || || | ||| || || | || | || || ||| |||||| Sbjct 376780 GAGTTCCAGGTGGTGAACCCCTGGCTGCTGCGTGACCTGGTCGAGATGAACCTGTGGTCC 376721 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTT 364968 |||| |||||||||| ||||| |||| ||||| | |||||||| || | Sbjct 376720 GACAACATGAAGAACCGCATCATTGCCGACGGCGGTTCCATCCAGAACATCCCCAACATC 376661 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || || || ||| | | ||||| || || ||||| || || ||| ||| | | Sbjct 376660 CCTGACGAGACCAAGGCGCTCTACAAGACGGTCTGGGAGATCTCGCAGCGCACTATTGTG 376601 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 | ||||||||||| || || || || || ||| |||||| | ||| | |||| Sbjct 376600 CAGATGGCGGCCGACCGTGGCGCCTTCATTGACCAGTCGCAGTCGCTCAACATTCACATG 376541 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTT 365148 |||| ||| | |||| | || |||||| ||| ||| ||||| ||||| Sbjct 376540 CGCGAGCCGACCATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTGGGTCTC 376481 Query 365149 AAGACAGG 365156 |||||||| Sbjct 376480 AAGACAGG 376473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352264062560