Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq18 183 3e-41 seq76 129 6e-25 seq45 116 3e-21 seq12 116 3e-21 seq25 100 3e-16 >seq18 Length=496665 Score = 183 bits (202), Expect = 3e-41 Identities = 923/1448 (64%), Gaps = 51/1448 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||| ||||||||||||| |||||| ||| || | ||| || ||| |||| Sbjct 376764 TTCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGGGC 376823 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| ||||||| ||||||||||| || | |||| || || |||||| ||||| | Sbjct 376824 TCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCATC 376883 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| | ||||||||||||||| | | ||| | ||| |||| Sbjct 376884 AGCAGACTG--TTGCGGATGCCGTGCTTCTTGATCTTGGCACGCAGCTCAGTCCAGTCCC 376941 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCT----CGCTGGCG 145291 | || | ||| | || | ||||||||| ||||| ||||||| | | |||| Sbjct 376942 ACAGATCCGAGGGCGTGACATTCCACATGTCCGGCTGCAGGATGCCCTGCGACACAGGCG 377001 Query 145292 GGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCC 145351 ||| | | || ||| |||| | | ||| ||||||| | ||| Sbjct 377002 ----AGCCCTCGTACGACGCGTAGACGCCCTCGATCTCGGCCAGCTCGCTCGAGGTCTCG 377057 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTC 145411 ||||| || || || |||||| || || |||||||| ||| || | Sbjct 377058 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTGCGCGCCTCGGGCGAC 377117 Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471 || | |||||||||||| | ||| ||||| || || ||||| || ||||| || ||| Sbjct 377118 TCAAATGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCCACACCAATG 377177 Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATA-TCGATTACGGTC 145527 || || || ||||||||| | | || |||| | || || | | | || ||| Sbjct 377178 GGACGGTGGCGCATGTTGCTGTTGCGAGC---CTCGGGCACCGGGTAGTAGTTGAC-GTC 377233 Query 145528 GATAATTTTATTCAAGTTTCGCACTACTACCTTTGT---AATGTGCCGCAACTTTTCAAA 145584 || || |||| ||| ||||| || ||||| || | |||| | ||| || Sbjct 377234 AATGATGCGGTTCAGGTTGCGCACAACGACCTTGGTCACATCGTGCAGGGCCTT---GAA 377290 Query 145585 GTCAAACC------GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAA 145638 ||| | | | || ||| |||| | | || | ||| || || |||| Sbjct 377291 GTCGTAGCTCTGGTTGGACTGGTCCACGA-AAGCCGGC-----AGGGCAATGGAGGCCAG 377344 Query 145639 ATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCT 145698 || || || || ||| || | | | ||| | || ||||| | |||||| ||| Sbjct 377345 GTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGTGCACAAGTTGGA 377404 Query 145699 ACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAG 145758 | |||||| |||| || | ||| || || || | |||||| ||||||||| || Sbjct 377405 GCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAG 377464 Query 145759 CATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCG- 145817 |||| | || ||| ||||| ||| | ||| | || | || | ||| | Sbjct 377465 CATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATGGCATACCACAGCTTCTGAGC 377524 Query 145818 CACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACG 145877 | | ||| || || |||||||| | ||||| || ||| || | || ||| Sbjct 377525 CTTGATGGTGCCGC-GGCCACGGCCCTCCTTCTCGTACTTTTCGTACAGGGCTTCGAACT 377583 Query 145878 CGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGC 145937 | |||||||| |||| |||||| || |||| | | || ||||| |||| ||| || Sbjct 377584 CCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATGAGCGTCCAGGTGC 377643 Query 145938 CGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC 145997 |||| | ||||||| ||| |||| ||| || | |||||| || | || || | Sbjct 377644 CGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCATGAACAGATCAC 377703 Query 145998 GCGCTTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTC 146055 | || | ||||| || ||| | || || | || | ||| | ||| ||| Sbjct 377704 GGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGC-GCAGGTCGAGGA-ACTCAAAGACGTC 377761 Query 146056 CGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTC 146112 ||||||||||| || | |||| | || || || || ||| || |||||||| Sbjct 377762 GGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTCCGCCCTGGTC 377821 Query 146113 CACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCC 146172 |||| || || ||||||| |||||||||| |||||| || |||| ||| ||| Sbjct 377822 GACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAGGTGCC 377881 Query 146173 GTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC 146232 ||| || | || || || || || | || || | || | ||| | || Sbjct 377882 GTTGGTGCCGGCAATGTAGGATCCTGTGGCACGGATGCGGTGTATGTTGAGGCCAATGCC 377941 Query 146233 GCC-GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGC 146291 ||| ||||| |||||| || ||| ||| ||| || ||||| ||||| || |||| Sbjct 377942 GCCAGCCGT-CTTGGAAATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCGATGC 378000 Query 146292 TATCG-CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCC 146350 | ||| | | | ||| ||| ||| |||||||| ||| ||| ||| |||||| || || Sbjct 378001 TGTCGTCCTTG-ATGTCGACCAGGAAGCACGACGACAGCTGAGCCTGCGGCGTACCGGCG 378059 Query 146351 GAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCG 146410 ||| | ||| || ||||| || || || | | ||| || || || Sbjct 378060 TTGAAAAGCGTGGGTGAGGCGTGAGTGAAGGACTTGCTGGACATGTAGTTGTAGGTCTCC 378119 Query 146411 ATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGG 146470 ||| | | | | |||||| ||||||| ||| |||||||| | |||||| || Sbjct 378120 ATAACACGCTCGACATTGTCGCCCCAGATGCCCACAGCCACGCGCATAATCATGTGCTGA 378179 Query 146471 GGCCGCTC 146478 |||||||| Sbjct 378180 GGCCGCTC 378187 >seq76 Length=1205562 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||||| || | || | ||| |||||| || |||||||| ||| Sbjct 522111 CCGCCGCGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 522170 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 522171 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 522230 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||| | Sbjct 522231 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACC 522290 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||||| ||| ||||| || || || || ||||| |||||||||| Sbjct 522291 TCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGA 522339 >seq45 Length=1349219 Score = 116 bits (128), Expect = 3e-21 Identities = 161/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| || ||||| | || | ||| |||||||| || |||||||| Sbjct 1003374 ATGATGCCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 1003315 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || |||||| ||||| ||||||||||| ||| |||| | ||||| ||||| Sbjct 1003314 TCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCA 1003255 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| || || ||||| ||| || ||||| | || | || || | |||| Sbjct 1003254 GGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGAC 1003195 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAA 131225 |||| || | ||| | ||| || || || || || || ||||| Sbjct 1003194 TCGACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 1003151 >seq12 Length=2460794 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | ||| | ||| |||||| || |||||||| |||||| Sbjct 54478 CCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 54419 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| | || | ||||| || || || || Sbjct 54418 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGA 54359 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || || | ||||| | Sbjct 54358 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACC 54299 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || ||||| || || || ||||| |||||||| Sbjct 54298 TCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 54252 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | || ||||||||| |||||||| || || Sbjct 54935 GCCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACT 54876 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||| |||||||| || ||| |||| || ||||||||||| || || Sbjct 54875 GAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGG 54816 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| ||| ||| | | || | ||||| | ||||| | Sbjct 54815 AATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCAC 54756 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| ||||| || || || |||||||| Sbjct 54755 CTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | || |||||||||||||||||| |||||| Sbjct 54706 CCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 54647 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || |||||||| || |||| | ||||||||||| || ||| Sbjct 54646 AGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGG 54587 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | ||||| | || || | Sbjct 54586 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACC 54527 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| ||||| || || || |||||||| Sbjct 54526 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||| || | || | || |||||||| || |||||||| || || Sbjct 55163 GCCGCCGCGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACT 55104 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||| ||||| || || ||| |||| || ||||||||||| || || Sbjct 55103 GAGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGG 55044 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || ||| ||| | | || | || || | ||||| | Sbjct 55043 AATGCCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAAC 54984 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || |||||||| |||||| Sbjct 54983 CTCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCATG 54935 >seq25 Length=315089 Score = 100 bits (110), Expect = 3e-16 Identities = 250/368 (68%), Gaps = 15/368 (4%) Strand=Plus/Minus Query 46234 GGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCAT 46293 ||| | |||||||| ||||| || |||||||||||| ||||| |||||||| ||||| Sbjct 43370 GGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGTCTGCAC 43311 Query 46294 ACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTT-GC--GCCCGAC 46350 || ||||| || || || || | | | | | || | || | | || || | | Sbjct 43310 ACCGACTTCGCCTGCCTG--CTGTT-CTCGCACCTGAAGAACCGCCCTAGCAAGCAGGTC 43254 Query 46351 ACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCA 46410 || | | ||| || || || || ||| ||| | ||||| | || | || Sbjct 43253 GTCGAGGACATCATTGTC---GATGCCGTTCGCATCGAGCAAGAGTTCCTGACCGAGGCT 43197 Query 46411 CTGCCCGCTGCCCTGCTGGGCATGAACGC-ACAGTCAATGTGCGACTACATCGAGTTTGT 46469 ||||| || ||||| ||||||||| | || ||| || | ||||| ||||| || Sbjct 43196 CTGCCGTGCGCTCTGCTCGGCATGAACTCCACCCTCATGAAGC-AGTACATTGAGTTCGT 43138 Query 46470 AGCGGACCGACTGCTCGTGCAGCT-TCACCAGCC-GAAGCATTTTCACGCGCGCAATCCA 46527 || ||||| ||||| ||| ||| || || | |||| || | || ||| || Sbjct 43137 GGCTGACCGCCTGCTGGTG--GCTCTCGGCAACGAGAAGGTCTTCCGCGTCACCAACCCC 43080 Query 46528 TTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTC 46587 || || || ||| | ||||||||||||| ||||| || || || ||||| ||||||||| Sbjct 43079 TTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTC 43020 Query 46588 GGCGAGTA 46595 |||||||| Sbjct 43019 GGCGAGTA 43012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012327987200