Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq60 140 2e-28 seq12 107 1e-18 seq19 98.7 7e-16 seq76 82.4 5e-11 >seq60 Length=8672 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 116 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 57 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 56 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 22 >seq12 Length=2460794 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| ||||||||||||||||||||||| ||||| || Sbjct 54708 TACCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGC 54649 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | || | || || | ||| || || ||||| || ||||| || || || | | Sbjct 54648 TCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCG 54589 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| ||| || ||| ||||| | || ||||| | ||| | Sbjct 54588 GGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCA 54529 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| || || || || |||||||| Sbjct 54528 CCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | ||||| ||| || ||||||||||| || || ||||| || Sbjct 54480 TACCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGC 54421 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || |||| || | || || || || || || ||||| |||||||| | || Sbjct 54420 TCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGG 54361 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTC 38266 | | ||| || |||||| ||| || ||| ||||| | || || || | || || Sbjct 54360 GAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGAC--TC 54303 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || | || || || || || || | ||| || ||||| |||||||| || Sbjct 54302 AACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCATATT 54249 >seq19 Length=496586 Score = 98.7 bits (108), Expect = 7e-16 Identities = 204/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGG 6244 |||| ||||||| |||||||||||||| ||| ||| ||||| ||||| |||| || Sbjct 224787 ATGTCGCGGACGTCTTCTACCGCTACAAGATGGAGCG--TCTGCAGACCAAGATCGAAGG 224730 Query 6245 TAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGG 6304 || || ||||| || || || ||| | ||| || | ||||| || | || | Sbjct 224729 CAAAGGCAACGGCATCAAGACGGTCGTCACCAATCTGACCAGCGTCGCCCAGTCTCTGGC 224670 Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364 ||||| | | |||| | || || || || | ||| || ||||| ||||| | | Sbjct 224669 CCGCCCCGGTGCGTACCTCATCAAGTACTTTGGCTTCGAGCTGGGCGCCCAGACCAACAT 224610 Query 6365 TGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424 || | |||| |||| ||| | |||||| | || | | |||||||||||| Sbjct 224609 CGACCCGGCCGACGACCGCTGGATCATCAACGGAGCCCACGAGGCGAACAAGCTGCAGGA 224550 Query 6425 CTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || || |||||||| || ||||||||| || || | | ||| | ||||| ||||| Sbjct 224549 CTACCTCGACGGCTTCATCTCCAAGTTTGTTCTCTGCAAGAAGTGCAAGAACCCCGAGAC 224490 Query 6485 CG 6486 || Sbjct 224489 CG 224488 >seq76 Length=1205562 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| |||| || || ||||||||||| || || ||||| || || | || | Sbjct 522122 ACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 522181 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || | || || || || || || ||||| || || || | ||| | ||| || || Sbjct 522182 GTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTT 522241 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||| ||||| | || || || ||||| || | ||||| Sbjct 522242 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAAT 522301 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || |||||||| | ||| || ||||| ||||||||| || Sbjct 522302 GGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGATT 522341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946873426480