Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq13 109 7e-19 seq31 89.7 6e-13 >seq13 Length=672118 Score = 109 bits (120), Expect = 7e-19 Identities = 115/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 |||| |||| |||||||||||| || | | |||||||||||| |||| ||| Sbjct 570761 CCCGCAGATCGGCGACAAGTTTGCGTCGCGCCACGGGCAAAAGGGCACCATCGGCGTGAC 570702 Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168 | || | |||||||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 570701 GTACCGCTCCGAAGACATGCCCTTTACCACGGAGGGCATCACGCCCGACATCATCATCAA 570642 Query 15169 CCCCAACTGCATCCCGTCCCGCATGACCAT 15198 ||| || |||||| || ||||||||||| Sbjct 570641 CCCGCACGCCATCCCCTCGCGCATGACCAT 570612 >seq31 Length=224113 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/165 (75%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 15036 GCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGC 15094 |||||| ||| |||||||| ||||||||||| | || | | ||| ||||||||| Sbjct 198737 GCCAGACGCGGCGCCCCGAGATCGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGC 198795 Query 15095 A-CGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCA--GGCATGACG 15151 ||| |||||| || || |||||| ||||||||||||| ||| || ||| || Sbjct 198796 GTCGT-CGGCATCATCGTCGACCAGGAGGACATGCCCTTTA--GCGACAGCGGCGTGTGC 198852 Query 15152 CCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGACC 15196 |||||||| ||||| ||||| || || ||| || ||||||||| Sbjct 198853 CCCGACATGATCATGAACCCGCACGGCTACCCCTCGCGCATGACC 198897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611391388608000