Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12 109 5e-19 seq45 82.4 7e-11 >seq12 Length=2460794 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| |||| || ||||||||| Sbjct 54252 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCT 54311 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| || || ||||| || || Sbjct 54312 GACACCATCGA--CAATGTCAAGTCGAAGATTCA-GGACAAGGAGGGCATTCCCCCAGAT 54368 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| ||||||| || ||||| || | || || | ||||| || |||| ||| Sbjct 54369 CAACAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTAC 54428 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||| || ||| | ||||| Sbjct 54429 AACATCCAGAAGGAGAGCACCCTGCATCTGGTGCT 54463 >seq45 Length=1349219 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || || ||||||| | || || ||||| || ||||| ||| Sbjct 1003151 TTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 1003210 Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || | ||| || ||| ||||| || || || || |||||||||||||| | Sbjct 1003211 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAACAGCGCCTG 1003270 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187 || || || ||||| || | || |||| ||||| || ||| ||||| || || || Sbjct 1003271 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 1003330 Query 25188 GAATCCACGCTACATTTAGTGCT 25210 || ||||| || || | ||||| Sbjct 1003331 GAGTCCACCCTCCACCTGGTGCT 1003353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327577505200