Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13]
80 sequences; 34,270,891 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq12 109 5e-19
seq45 82.4 7e-11
>seq12
Length=2460794
Score = 109 bits (120), Expect = 5e-19
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| |||| || |||||||||
Sbjct 54252 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCT 54311
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || ||| | || | ||| ||||| || || ||||| || ||
Sbjct 54312 GACACCATCGA--CAATGTCAAGTCGAAGATTCA-GGACAAGGAGGGCATTCCCCCAGAT 54368
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| ||||||| || ||||| || | || || | ||||| || |||| |||
Sbjct 54369 CAACAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTAC 54428
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || ||| || ||| | |||||
Sbjct 54429 AACATCCAGAAGGAGAGCACCCTGCATCTGGTGCT 54463
>seq45
Length=1349219
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| | || || || ||||||| | || || ||||| || ||||| |||
Sbjct 1003151 TTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 1003210
Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
|| | ||| || ||| ||||| || || || || |||||||||||||| |
Sbjct 1003211 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAACAGCGCCTG 1003270
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187
|| || || ||||| || | || |||| ||||| || ||| ||||| || || ||
Sbjct 1003271 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 1003330
Query 25188 GAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || | |||||
Sbjct 1003331 GAGTCCACCCTCCACCTGGTGCT 1003353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327577505200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |