Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12 123 2e-23 seq76 98.7 8e-16 seq45 89.7 4e-13 >seq12 Length=2460794 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || ||| |||| || || |||||| | | Sbjct 54480 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAATCTTCG 54539 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| ||||||||||| || || || || || Sbjct 54540 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 54599 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| || | |||||| |||||| | ||| |||||| Sbjct 54600 CAGCGCCTTATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACTCTGAGCGACTACAAC 54659 Query 22399 ATTCAAAAAGA 22409 |||||||| || Sbjct 54660 ATTCAAAAGGA 54670 Score = 111 bits (122), Expect = 1e-19 Identities = 170/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 22206 TACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGA 22265 ||||| | | || ||||| || || || || || | ||||| || || ||||||| || Sbjct 54240 TACATCT-TCAATATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGA 54298 Query 22266 AGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTAT 22325 || || | | || ||| | ||| || |||| || ||||| ||||||||||| || Sbjct 54299 GGTTGAGTCGTCTGACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCAT 54358 Query 22326 TCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGT 22385 ||| || |||||||| || ||||| || || ||||| ||| | ||||| ||||||| | Sbjct 54359 TCCCCCAGATCAACAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCT 54418 Query 22386 CTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||||||| || || || |||| | ||| | || | || |||| || || Sbjct 54419 GAGCGACTACAACATCCAGAAGGAGAGCACCCTGCATCTGGTGCTCCGCCTGCGTGGTGG 54478 Query 22446 T 22446 | Sbjct 54479 T 54479 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || ||| |||| || || ||||| | | Sbjct 54708 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAGTCTTCG 54767 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || || |||||||||||||| ||||| || || || Sbjct 54768 GATACCATTGACAACGTGAAGTCGAAGATCCAAGACAAGGAGGGCATTCCGCCAGACCAG 54827 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||| | |||||| ||| ||| || || |||||| Sbjct 54828 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACCCTCAGTGACTACAAC 54887 Query 22399 ATTCAAAAAGA 22409 || ||||| || Sbjct 54888 ATCCAAAAGGA 54898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| || ||| |||| || || || || | | Sbjct 54936 ATGCAAATTTTCGTCAAGACCCTTACCGGCAAGACGATCACGCTGGAGGTTGAGTCTTCG 54995 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| ||||||||||| ||||| || || || Sbjct 54996 GACACGATCGACAACGTTAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCAG 55055 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || |||||| | |||||| ||| ||| || || |||||| Sbjct 55056 CAGCGCTTGATCTTCGCTGGAAAACAGCTGGAGGATGGCCGTACCCTCAGTGACTACAAC 55115 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | ||| |||| | ||||| || Sbjct 55116 ATCCAGAAGGAGTCTACGCTGCACCTGGTTCTGCGGCTTCGCGGCGG 55162 >seq76 Length=1205562 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 |||| ||||| || || || || || | || ||||| || | || || || || || Sbjct 522343 GTAATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTTGAG 522284 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || || | ||| || |||| || || || ||||||||||| ||||| || Sbjct 522283 TCCTCGGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCA 522224 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || || || ||||| ||| | ||||| ||||||| ||||||| Sbjct 522223 GACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGAC 522164 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || |||| | || | || |||| | ||||| ||| Sbjct 522163 TACAACATCCAGAAGGAGAGCACCCTGCACCTGGTCCTGCGTCTTCGCGGCGGT 522110 >seq45 Length=1349219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || ||||| || || || || || ||||| Sbjct 1003226 AAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAACAGCGCCTGATCTTCGCTGGCAAG 1003285 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| ||||||| | ||||| |||||||| || || || |||||| Sbjct 1003286 CAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACC 1003339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727590765200