Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-17 seq34 86.0 1e-11 seq31 86.0 1e-11 seq18 86.0 1e-11 seq8 86.0 1e-11 >seq1 Length=2664519 Score = 105 bits (116), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| ||||||||||| || |||| ||||||||||| ||| Sbjct 381936 GGTGAGGACCTGTGCAACTGCACGTTCTCGCTCGCCTACGGTGCCAAGATTCTGCTGAAC 381995 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||| |||| | | ||||||||| | || || ||||| ||| ||||| || | Sbjct 381996 CAGACCAGCCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGCCCCAACGGTTCC 382055 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||||||||| |||| ||| | || || || || || ||| Sbjct 382056 GGCAAGTCGACTCTGATGCGCGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 382114 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 382115 GAGCGAGGTCAAGACGGTCTTCGTCGAGCACGACCTGGACTC 382156 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 280156 TGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAG 280215 ||| ||| || |||| |||||||| ||||| ||||| || ||||| || || |||| | Sbjct 382747 TGAGCTCGCGTATTGCCGTCATTGGCCCCAACGGTGCCGGCAAGTCCACGCTGGTCAACG 382806 Query 280216 TCCTGACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATG 280271 | || || || ||| | || |||| ||| ||| | | | |||| |||||| Sbjct 382807 TGCTCACGGGTGAGCTGATCC---CCAC-GAGCGGTGAGATCTACCAGCACGAGAACATG 382862 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| || |||||||| || ||||||||| |||||||||||| ||| Sbjct 382863 CGTATTGCCTACATCAAGCAGCACGCGTTTGCCCACATCGACAACCACCTGGACTCCACT 382922 Query 280332 CCTAACCAATACATTCAGTGGCG 280354 || | | ||||| |||||||| Sbjct 382923 CCCTCCGAGTACATCCAGTGGCG 382945 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | || || ||| ||||| | | | ||||| ||||| |||||||| || || | Sbjct 383308 CCAACTTCGGCCTCGACGCCGAGCTGATTTCCCACTCGCGCATGCGCGGTCTGTCGGGTG 383367 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| | ||| | | || |||| |||||| | || || ||||||| Sbjct 383368 GCCAGCGTGTCAAGGTCGTCCTGGCGGCCTGCTC-GTGGCAGCGTCCCCATCTGATCGTC 383426 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || ||||||||||||||||| ||||| ||||| Sbjct 383427 CTGGACGAGCCTACCAACTACCTGGATCGCGA 383458 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 352952 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 352893 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 352892 CCCGCATCGGGC 352881 >seq34 Length=1623502 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 1471241 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 1471182 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 1471181 CCCGCATCGGGC 1471170 >seq31 Length=224113 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 130007 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 130066 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 130067 CCCGCATCGGGC 130078 >seq18 Length=496665 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 293593 AGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGC 293652 ||||||| || | ||| | |||||| ||| ||| ||||||||||| ||||||| Sbjct 377040 AGCTCGCTCGAGGTCTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGC 377099 Query 293653 TTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGACCC 293712 ||||| |||| || ||||| ||||| |||| || || |||| ||| ||| Sbjct 377100 TTGCGCGCCTCGGGCGACTCAAATGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCC 377159 Query 293713 TGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACCGCA 293772 || | ||| ||||||| ||| || | ||| ||||||| | |||||||| |||| Sbjct 377160 TGGATACCCACACCAATGGGACGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACCGGG 377219 Query 293773 TATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 || | || |||||| | | || |||||| Sbjct 377220 TAGTAGTTGACGTCAATGATGCGGTTCAGGTT 377251 >seq8 Length=781029 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 752285 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 752344 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 752345 CCCGCATCGGGC 752356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835746467280