Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq76 172 1e-37 seq45 168 1e-36 seq12 152 9e-32 seq25 138 2e-27 seq1 105 1e-17 seq10 84.2 4e-11 >seq76 Length=1205562 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| |||| |||| ||| || ||| ||| || |||||||| || |||||| Sbjct 522111 CCGCCGCGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 522170 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || ||| Sbjct 522171 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 522230 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||| ||||| | || || || Sbjct 522231 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACC 522290 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | ||| ||||| || |||||||||||||||||||| |||||||| || Sbjct 522291 TCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 522340 >seq45 Length=1349219 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 1003368 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1003309 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | |||||||| || || Sbjct 1003308 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGG 1003249 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 1003248 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 1003189 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||||||||| || || ||||||||||| ||||| Sbjct 1003188 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 1003151 >seq12 Length=2460794 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| |||| |||| ||| ||||| ||||| || |||||||| || || | Sbjct 55162 CCGCCGCGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTG 55103 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || ||||| || | | || ||||| || ||| Sbjct 55102 AGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 55043 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| ||| ||||| ||||| | || || || Sbjct 55042 ATGCCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACC 54983 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || || || |||||||||||||| || ||||| Sbjct 54982 TCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| || || ||| ||| || |||||||| || ||| Sbjct 54478 CCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 54419 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | ||||| || || ||| Sbjct 54418 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGA 54359 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||||||||| | || || || Sbjct 54358 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACC 54299 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || |||||||||||||| |||||||| Sbjct 54298 TCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 54252 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| || ||| ||| ||||||||||| || || | Sbjct 54934 CCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTG 54875 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | || ||||| || ||| Sbjct 54874 AGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 54815 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| | ||| ||| || ||||| || | || || || Sbjct 54814 ATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACC 54755 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || || || || |||||||| || |||||||| Sbjct 54754 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 >seq25 Length=315089 Score = 138 bits (152), Expect = 2e-27 Identities = 315/469 (67%), Gaps = 4/469 (1%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || |||||||||||||| || || |||||||||||||| |||||| | Sbjct 42993 CATGACACCGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 43052 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||||| ||| |||||||||||| |||||||| | ||| || ||| || || Sbjct 43053 CAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGACGCGGAAGACCTTCTCGTTGCC 43112 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||||||||||||||| |||||||| |||| ||| ||||| Sbjct 43113 GAGAGCCACCAGCAGGCGGTCAGCCACGAACTCAATGTACTGCTTCATGAGGGTGGAGTT 43172 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || ||| || | || ||| | ||| || | ||| || || || Sbjct 43173 CATGCCGAGCAGAGCGCACGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATGCGAACGGC 43232 Query 10175 TTCCTCGACGATGCTCTTTACCACGT-CAAGGGACAGCTTGTTCTCGAGCTTCGAATACA 10233 || | | |||| || || || | | | | || ||||| || | ||| ||| Sbjct 43233 ATCGACAATGATGTCCTCGACGACCTGCTTGCTAGGGC-GGTTCTTCAGGTGCGAGAACA 43291 Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 | || | || | ||| || |||||||| || ||| | ||||||||| || Sbjct 43292 GCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGG 43351 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353 |||||||||||| || || || || ||||||||| |||| |||| | || || Sbjct 43352 TCAGACCGGGCATCAGGCCTCGCTTCTTCAGCCAGAAGATGGACGAGAAGGCACCACTGA 43411 Query 10354 ACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 | | | |||||| || ||| | | ||||| | ||||| || |||| Sbjct 43412 AGAAGATACCCTCAACAGCA-GCGAAAGCGACCAAGCGCTGAGCAAAGG 43459 Score = 87.8 bits (96), Expect = 3e-12 Identities = 121/169 (72%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 ||||||||| | || ||||| || | | |||||||| | |||||||| || ||| Sbjct 43741 CAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCAAAGAACGCCAGGATGTGGGAGACGAA 43800 Query 10682 GTGGCGCTCATCATCGTTCA----GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCT 10737 || |||||| |||||||||| ||| ||| ||||| | ||||| | || | Sbjct 43801 GTAGCGCTCGTCATCGTTCATACGGTTGTTC----CAGTCATGGAGATCCTTGGACAGGT 43856 Query 10738 GGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 | |||||| | |||||||| | ||| ||||||||||||||||||| Sbjct 43857 CAATCTCCTCGGCAGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTG 43905 >seq1 Length=2664519 Score = 105 bits (116), Expect = 1e-17 Identities = 173/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAG 225809 |||||| |||| | | | | ||| | |||||| || ||| | |||||| || || | Sbjct 382175 GGTCATCTCCGTGTCGGCAGAGTCCAGGTCGTGCTCGACGAAGACCGTCTTGACCTCGCT 382116 Query 225810 AAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGC 225869 || | |||||||||||| | ||| | || || || || | ||| || ||||| Sbjct 382115 CTGCTT-GGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCGCGCATCAGAGTCGACTTGC 382057 Query 225870 CCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGG 225929 | | |||||||| ||| || ||||| | | || ||||| | | |||| || Sbjct 382056 CGGAACCGTTGGGGCCGCACAGACCGTAGCGCTGGCCACGCTTCAGGCGCAGGCTGGTCT 381997 Query 225930 AGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCAC 225989 |||||| || |||||| |||| ||||| || |||||| ||| | |||||||||||||| Sbjct 381996 GGTTCAGCAGAATCTTGGCACCGTAGGCGAGCGAGAACGTGCAGTTGCACAGGTCCTCAC 381937 Query 225990 CCTCCTC 225996 ||||||| Sbjct 381936 CCTCCTC 381930 >seq10 Length=700997 Score = 84.2 bits (92), Expect = 4e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 224961 GGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGT 225020 |||| | ||| ||||||||||||||| | |||||||| || ||| | |||||||| Sbjct 64457 GGTCGTCGCCGTGGGCATACCGCCACTGCAGATACTGGTTTGGCGTCTTTTCCAGGTGCA 64398 Query 225021 TCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCC 225080 |||||| || | | ||||||||| | || | || |||| ||||| |||||| Sbjct 64397 TCTCAACGTGCTCCAGAGCATGCTGCTTAATATAGCCGATACGCAAATTGGGGTGCTTCT 64338 Query 225081 ACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGC 225140 || ||| | | ||| | | ||| |||| || | |||||||||||| | || | Sbjct 64337 CGACCTTGCCGCTCGACGGGACTACTTCGGCGGTTAGCAGCTTGATGAGCGTCGATTTTC 64278 Query 225141 CCGCACCATTGGGGCCAAT 225159 | || || || || ||||| Sbjct 64277 CAGCTCCGTTCGGACCAAT 64259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621478377600