Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq12 123 2e-23 >seq12 Length=2460794 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || |||||||||||||| ||||||| ||| || ||| || ||||| || ||||| || Sbjct 54670 TCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAG 54611 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || ||||| ||||| || || ||||| || ||||| |||||| || | | Sbjct 54610 ATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 54551 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||| || | ||||| || |||| || | ||| |||||||||||||| || ||| Sbjct 54550 TCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACA 54491 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 54490 AAGATCTGCAT 54480 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || ||||| |||||||| || || | ||||| ||| || || || || || ||| || Sbjct 54898 TCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAG 54839 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| ||||| || |||||||| || ||||| ||||| || | | Sbjct 54838 ATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTG 54779 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| ||| || | || || || |||| || | ||| |||||||||||||| || ||| Sbjct 54778 TCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACA 54719 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 54718 AAGATCTGCAT 54708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133990368960