Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18 489 3e-133 seq25 219 8e-52 >seq18 Length=496665 Score = 489 bits (542), Expect = 3e-133 Identities = 1255/1886 (67%), Gaps = 81/1886 (4%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| ||||||||| ||| | | ||||||| ||| | ||||||||||||||| |||| Sbjct 376420 CCACAGTGAACTGGATGGGCTGGGCCGCGGCCTGGGTGCGCAGGTAGTACATGCCTGTCT 376479 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 |||| || |||| || || ||||||| || | ||| ||| Sbjct 376480 TGAGACCCAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCAT----------- 376528 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGC 243913 ||||| | |||| || | |||||| ||||| |||||| | ||||| |||| || Sbjct 376529 GGTCGGC-TCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGG-CGCCACGG 376586 Query 243914 TCTGCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 || || ||||| | | || | ||| || ||||| | |||||||||||| | Sbjct 376587 TCGGCCGCCATCTGCACAATAGTGCG-CTGCGAGATCTCCCAGACCGTCTTGTAGAGCGC 376645 Query 243973 CTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032 |||| | || |||| ||||||||| | || || || | | |||| | Sbjct 376646 CTTGGTCTCGTCAGGGATGTTGGGGATGTTCTGGATGGAACCGCCGTCGGCAATGATGCG 376705 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG-- 244090 | | |||||| ||| ||||||| || |||| | | || ||| ||| | Sbjct 376706 GTTCTTCATGTTGTCGGACCACAGGTTCATCTCGACCAG-GTCACG--CAGCAGCCAGGG 376762 Query 244091 -TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||||||||||| ||||| || | |||||| ||||||||||| | |||| | || || Sbjct 376763 GTTCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGGG 376822 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || ||| |||||||||| ||||| | ||| || ||||||||||||| || Sbjct 376823 CTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCAT 376882 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||||||||| | | ||||||| ||| ||| | | ||||| |||||||||| Sbjct 376883 CAGCAGACTGTTGCGGATGCCGTGCTTCTTGATCTTGGCACGCAGCTCAGTCCAGTCCCA 376942 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || ||||| | ||| || ||||||||| |||||| | |||| Sbjct 376943 CAGATCCGAGGG-------CGT--GACATTCCACATGTCCGGCTGCAGGATGCCCTGCGA 376993 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTAC---AGCT 244386 || || ||||||||| | || |||| || ||| || |||||||| | || | Sbjct 376994 CACAGGCGAGCCCTCGTACGACGCGTAGACGCCCTCGATCTCGGCCAGCTCGCTCGAGGT 377053 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 |||| || || |||| ||||||||||||||||||| |||| | | ||| |||| Sbjct 377054 CTCG---AGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTGCGCGCCTC 377110 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | | || || |||| || | || ||| | || ||||| ||||| | || | Sbjct 377111 GGGCGACTCAAATGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCCAC 377170 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||| | ||| ||| ||||| | || |||||||| ||||| ||||| | Sbjct 377171 ACCAATGGGACGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACCGGGTAGTAGTTGAC 377230 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGC-TGAA 244625 ||| || | ||| |||||||| || ||||| | || || || | || | Sbjct 377231 GTCAATGATGCGGTTCAGGTTGCGCA----CA-----ACGACCTTGGTCA-CATCGTGCA 377280 Query 244626 AGTCGT---ACTCGTAGGGATCCTCGGCGATGG--TGATCCTCACAAACTCGTTGAGGGC 244680 | | | | |||||| ||| | | ||| || ||| | || | | ||||| Sbjct 377281 GGGCCTTGAAGTCGTAG-----CTCTG-GTTGGACTGGTCCACGAAAGCCGGC--AGGGC 377332 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 | | ||||||||||||||| || ||||| || | | | ||||| ||||||||| || Sbjct 377333 AATGGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGT 377392 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| | ||| || ||||||||||| || || || ||| |||| ||||||| Sbjct 377393 GCACAAGTTGGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTG 377452 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 ||||||||| ||||||||||| ||||||||| |||||| | || | | | ||| Sbjct 377453 GTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATGGCATACCA 377512 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 || | | |||||||| || | ||| | |||||| |||||| |||||| Sbjct 377513 CAGCTTCTGAGCCTTGATGGTGCCGCGGCCACGGCCCTCCTTCTCGTACTTTTCGTACAG 377572 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC-CGGGCACATGA 244979 ||| |||||||| ||| || ||| | ||||| |||||| ||| |||||||||| Sbjct 377573 GGCTTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCAC-TCGCTAGGGCACATGA 377631 Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 | |||| |||| | || || | || |||||| || || || ||||| || ||| Sbjct 377632 GCGTCCAGGTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCA 377691 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 ||| || || | || | ||| ||| ||| |||||| | ||| || | || | Sbjct 377692 TGAACAGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACT 377751 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 ||||||||||| ||||||| ||||||| ||||| || |||||||| |||||||| | Sbjct 377752 CAAAGACGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTC 377811 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATG 245215 | |||||||| | | | ||||| |||||||| |||||| | || | ||| Sbjct 377812 CGCCCTGGTCGA----CGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATG 377867 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| ||| |||||||||||| ||||||| || || | | || | | ||| Sbjct 377868 CCGTTGGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCTGTGGCACGGATGCGGTGTATG 377927 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 | ||| | ||||| || |||||| || | ||| ||| |||||| |||||| Sbjct 377928 TTGAGGCCAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTGAGGGTGTCGTAA 377987 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 |||||||| |||||||| ||| |||| || ||| ||||| || |||||||| | || Sbjct 377988 ATGCCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTGAGCCTGC 378047 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAAC 245455 || | | | |||||| || ||||| |||||| || ||| | ||| || | | | Sbjct 378048 GGCGTACCGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGAAGGACTTGCTGGACATGTAG 378107 Query 245456 CCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCAT 245514 ||| |||| | | | |||| |||||||| ||| || || ||| | ||| Sbjct 378108 TTGTAGGTCTCCATAACACGCTCGACATTGTCGCCCCAGATGCCCACAGC-CACGCGCAT 378166 Query 245515 GAGGGTGTGCTGGGGCGTCT---CGATGGGTCCCTCGGGTC-CCTTGAGCATGTAGGAGC 245570 | ||||||| ||| || | |||| | | | || |||||||| |||||||| Sbjct 378167 AATCATGTGCTGAGGCCGCTCAACAATGG----CGCTGTTCAGCTTGAGCAGGTAGGAGC 378222 Query 245571 GCTCGAGCGTCTTGAACCCAAAGTAC 245596 |||| || |||||||| ||||||||| Sbjct 378223 GCTCCAGGGTCTTGAAGCCAAAGTAC 378248 >seq25 Length=315089 Score = 219 bits (242), Expect = 8e-52 Identities = 373/529 (71%), Gaps = 35/529 (7%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC---GA----GAGTCCCGA 42685 || |||||| |||||||| || ||||| || |||||||| || |||||| Sbjct 43517 CCTTGCATCCGCAAGAAGGCCGATTGGGCTCTGCACTGGATCTCTGACAAGGAGTCC--- 43461 Query 42686 CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGG 42745 || || | || | |||| || || | || || ||||| ||||||||| || Sbjct 43460 ----ACCTTTGCTCAGCGCTTGGTCGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGG 43405 Query 42746 CGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCT 42804 |||||| | |||||||||||||| ||| || ||| | ||||||||| || ||||||| Sbjct 43404 TGCCTTCTCGTCCATCTTCTGGCTGAAGAAGCGAGGCCT-GATGCCCGGTCTGACCTTCT 43346 Query 42805 CGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCT 42864 | ||||| || ||| | |||||||| ||||| | ||||| |||||||| ||||||| Sbjct 43345 CCAACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCT 43286 Query 42865 CGAGCCACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCC 42923 || ||||| | | || ||||| | ||| || ||| || |||||| || ||| Sbjct 43285 CG---CACCTGAAGAAC-CGCCCTAGCAAGCAGGTCGTCGAGGACATCATTGTCGATGCC 43230 Query 42924 GTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAA 42982 || |||||| | |||||||| || || | ||| ||||| | ||| |||||||||| Sbjct 43229 GTTCGCATCGAGCAAGAGTTCCTGACCGAGGCTCTG-CCGTGCGCTCTGCTCGGCATGAA 43171 Query 42983 CCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGG 43042 | | ||||||| ||||||| ||| ||| || ||| | |||| | | ||| Sbjct 43170 CTCCACCCTCATGAAGCAGTACATTGAGTTCGTGGCTGAC---CGCCTG---CTGGTGGC 43117 Query 43043 TCTCAGC--CG----CCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTC 43096 |||| || || ||| | | | |||||||||||| |||||||||||||| Sbjct 43116 TCTCGGCAACGAGAAGGTCTTCCGCGTCACCAACCCCTTCGACTTCATGGAGAACATCTC 43057 Query 43097 GTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| |||||||||||||| |||||||||||||||| ||| |||||| Sbjct 43056 CCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAG 43008 Score = 143 bits (158), Expect = 5e-29 Identities = 236/336 (70%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||||||| Sbjct 43911 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACTGCCGAGGAGATTGACCTG 43852 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | |||| | || || ||| || |||| | ||| || Sbjct 43851 TCCAAGGATCTCCATGACTGGAACA-ACCGTATGAACGATGACGAGCGCTACTTCGTCTC 43793 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||| ||||| |||||||| |||||||| ||||| |||||||||| | | Sbjct 43792 CCACATCCTGGCGTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCG 43733 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| || | |||||| ||||||||||||||||||||||| || Sbjct 43732 CTTCAGTGGCGAGGTCCAAGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 43673 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || || |||| |||| |||||| ||| || Sbjct 43672 GGAGAACATCCACTCGGAGACCTACTCC---CTCCTCATTGACACCTACATCAAGGACCC 43616 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | ||||| | | |||||||| ||| | || || Sbjct 43615 TGCTGAGCGGACCCACCTGTTCAACGCCGTTGACAC 43580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338255660800