Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13]
80 sequences; 34,270,891 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq18 143 3e-29
seq25 102 1e-16
>seq18
Length=496665
Score = 143 bits (158), Expect = 3e-29
Identities = 519/802 (65%), Gaps = 15/802 (2%)
Strand=Plus/Plus
Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523
|| ||||| || || ||||| || || |||| | ||| || | | |||||| | |
Sbjct 377325 GGCAGGGCAATGGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACA 377384
Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583
|| ||||| ||||| || || || ||||||||||||||||| || || ||| |
Sbjct 377385 ATCTCCGTGCACAAGTTGGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGG 377444
Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643
|| || |||||||| |||||| | || | || ||||| || |||| || |||||
Sbjct 377445 TTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATG 377504
Query 114644 GCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 114702
|| | ||| | | || | | || | | ||| || | | || ||||||| |||||||||
Sbjct 377505 GCATACCACAGCTTCTGAGCCTTG-ATGGTGCCGCGGCCACGGCCCTCCTTCTCGTACTT 377563
Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT-G 114761
| ||| |||||||| ||||| || || | || | || || || || | || |
Sbjct 377564 TTCGTACAGGGCTTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCACTCGCTAG 377622
Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821
|||| | ||| | ||| || || ||| || ||||||||||| || || || ||||
Sbjct 377623 GGCACATGAGCGTCCAGGTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCC 377682
Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881
| ||||| ||| ||||| || ||| || || | || || || |||| |
Sbjct 377683 ACAGAGCCATGAACAGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 377742
Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 114941
| | || || | || || ||||||||||| |||||||| | || | || |
Sbjct 377743 CGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGC 377802
Query 114942 G---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998
| || |||||| || || | || ||| || || ||||| ||||| || |
Sbjct 377803 GCTTGTTTCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGA 377862
Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATC 115056
|||| || | || ||| || || || || || || || |||| | ||
Sbjct 377863 TGATGCCGTTGGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCT--GTGGCACGGATGCG 377920
Query 115057 ATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 115116
|| |||| | ||||| || || ||| ||| || || || || | |||| |
Sbjct 377921 GTGTATGTTGAGGCCAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTGAGGGT 377980
Query 115117 GCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTG 115176
| |||| || || ||||| ||| |||| | ||| |||||||| ||||| ||
Sbjct 377981 GTCGTAAATGCCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTG 378040
Query 115177 TGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--G 115234
| | || ||||| |||||||| || || |||| ||||| ||| | |||| |
Sbjct 378041 AGCCTGCGGCGTACCGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGA--AGGACTTGCTG 378098
Query 115235 GACATCTTATCGTAGGTCTCCA 115256
||||| | | |||||||||||
Sbjct 378099 GACATGTAGTTGTAGGTCTCCA 378120
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001
|| || |||| ||||| |||||||||||||| ||||| |||| ||| || | || |||
Sbjct 376803 TAAATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAG 376862
Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 114038
|| || |||||||| ||||| || || ||||| ||||
Sbjct 376863 GCCGTCGGCATGGGCGCCATCAGCAGACTGTTGCGGA 376899
>seq25
Length=315089
Score = 102 bits (112), Expect = 1e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| |||||||||||||| ||||| || || || |||||| ||| || ||||| || ||
Sbjct 43311 GTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCC 43370
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||||||| |||||| || | | || | ||| ||||||||| ||||| |||
Sbjct 43371 TCGCTTCTTCAGCCAGAAGATGGACGAGAAGGCACCACTGAAGAAGATACCCTCAACAGC 43430
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGG 126206
||||| || | | |||| ||||||||
Sbjct 43431 AGCGAAAGCGACCAAGCGCTGAGCAAAGG 43459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597353002646400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |