Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq18 143 3e-29 seq25 102 1e-16 >seq18 Length=496665 Score = 143 bits (158), Expect = 3e-29 Identities = 519/802 (65%), Gaps = 15/802 (2%) Strand=Plus/Plus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 || ||||| || || ||||| || || |||| | ||| || | | |||||| | | Sbjct 377325 GGCAGGGCAATGGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACA 377384 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || ||||| ||||| || || || ||||||||||||||||| || || ||| | Sbjct 377385 ATCTCCGTGCACAAGTTGGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGG 377444 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 || || |||||||| |||||| | || | || ||||| || |||| || ||||| Sbjct 377445 TTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATG 377504 Query 114644 GCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 114702 || | ||| | | || | | || | | ||| || | | || ||||||| ||||||||| Sbjct 377505 GCATACCACAGCTTCTGAGCCTTG-ATGGTGCCGCGGCCACGGCCCTCCTTCTCGTACTT 377563 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT-G 114761 | ||| |||||||| ||||| || || | || | || || || || | || | Sbjct 377564 TTCGTACAGGGCTTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCACTCGCTAG 377622 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 |||| | ||| | ||| || || ||| || ||||||||||| || || || |||| Sbjct 377623 GGCACATGAGCGTCCAGGTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCC 377682 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881 | ||||| ||| ||||| || ||| || || | || || || |||| | Sbjct 377683 ACAGAGCCATGAACAGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 377742 Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 114941 | | || || | || || ||||||||||| |||||||| | || | || | Sbjct 377743 CGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGC 377802 Query 114942 G---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | || |||||| || || | || ||| || || ||||| ||||| || | Sbjct 377803 GCTTGTTTCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGA 377862 Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATC 115056 |||| || | || ||| || || || || || || || |||| | || Sbjct 377863 TGATGCCGTTGGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCT--GTGGCACGGATGCG 377920 Query 115057 ATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 115116 || |||| | ||||| || || ||| ||| || || || || | |||| | Sbjct 377921 GTGTATGTTGAGGCCAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTGAGGGT 377980 Query 115117 GCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTG 115176 | |||| || || ||||| ||| |||| | ||| |||||||| ||||| || Sbjct 377981 GTCGTAAATGCCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTG 378040 Query 115177 TGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--G 115234 | | || ||||| |||||||| || || |||| ||||| ||| | |||| | Sbjct 378041 AGCCTGCGGCGTACCGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGA--AGGACTTGCTG 378098 Query 115235 GACATCTTATCGTAGGTCTCCA 115256 ||||| | | ||||||||||| Sbjct 378099 GACATGTAGTTGTAGGTCTCCA 378120 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || |||| ||||| |||||||||||||| ||||| |||| ||| || | || ||| Sbjct 376803 TAAATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAG 376862 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 114038 || || |||||||| ||||| || || ||||| |||| Sbjct 376863 GCCGTCGGCATGGGCGCCATCAGCAGACTGTTGCGGA 376899 >seq25 Length=315089 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| |||||||||||||| ||||| || || || |||||| ||| || ||||| || || Sbjct 43311 GTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCC 43370 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| || | | || | ||| ||||||||| ||||| ||| Sbjct 43371 TCGCTTCTTCAGCCAGAAGATGGACGAGAAGGCACCACTGAAGAAGATACCCTCAACAGC 43430 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 ||||| || | | |||| |||||||| Sbjct 43431 AGCGAAAGCGACCAAGCGCTGAGCAAAGG 43459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353002646400