Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 4e-14 seq76 84.2 2e-11 >seq12 Length=2460794 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| ||||| | || || || || |||||||| || Sbjct 54479 ACCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 54420 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| |||||||||||||| || |||| || ||||| || || || || Sbjct 54419 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGG 54360 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| || | || ||| | || || Sbjct 54359 AATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAAC 54300 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||||||||| | || || ||||| || ||||| || Sbjct 54299 CTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCATATT 54249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || |||| || || |||||||||||||| || Sbjct 54707 ACCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCT 54648 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || || |||||||| ||| | || || ||||||||||| || || Sbjct 54647 CAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGG 54588 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | ||||| | ||||| Sbjct 54587 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCAC 54528 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||||| ||| || || || || ||||| Sbjct 54527 CTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| || || ||||| |||||||| || || ||| || | || Sbjct 54919 AGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCC 54860 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || | ||||||||||| || ||||| || || || ||| Sbjct 54859 TCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCT 54800 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| | ||||| || | || | ||| Sbjct 54799 TGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTC 54740 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| ||| || || || || ||||| Sbjct 54739 TTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 >seq76 Length=1205562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | || |||||| |||| || ||||||||||| || | Sbjct 522147 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAG 522206 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| || ||||| || || || || || || || ||| ||| Sbjct 522207 ATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 522266 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || || || | || | |||||| || || | || || ||| Sbjct 522267 TCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACG 522326 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 522327 AAGATCTGCAT 522337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644300355200