Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq18 396 3e-105 >seq18 Length=496665 Score = 396 bits (438), Expect = 3e-105 Identities = 1134/1715 (66%), Gaps = 48/1715 (3%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 |||||| | ||||||| |||||| || |||||| || ||||| |||||| || | || Sbjct 378256 AATTACCAGTACTTTGGCTTCAAGACCCTGGAGCGCTCCTACCTGCTCAAGCTGAACAGC 378197 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 || ||||| || || || || | |||||||| || | || || ||| || Sbjct 378196 GCCATTGTTGAGCGGCCTCAGCACATGATTATGCGCGTGGCTGTGGGCATCTGGGGCGAC 378137 Query 93835 GACATGCCGAA--TGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGG 93892 | || ||| |||| || | | | || ||||| |||| | || | Sbjct 378136 AA--TGTCGAGCGTGTTATGGAGACCTACAACTACATGTCCAGCAAGTCCTTCACTCACG 378079 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGA 93952 || | || || || |||||||| || || ||| | | ||| |||| ||||| |||||| Sbjct 378078 CCTCACCCACGCTTTTCAACGCCGGTACGCCGCAGGCTCAGCTGTCGTCGTGCTTCCTGG 378019 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | ||||| |||| |||| || |||| ||||| ||||||| |||||| | Sbjct 378018 TCGAC-ATCAAGGACGACAGCATCGAGGGCATTTACGACACCCTCAAGACCTGTGCCATG 377960 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || || || || || || || ||| | ||| | | ||||||| || ||| Sbjct 377959 ATTTCCAAGACGGCTGGCGGCATTGGCCTCAACATACACCGCATCCGTGCCACAGGATCC 377900 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| ||||| ||||||||||||||| || |||| ||||| || ||||||||| Sbjct 377899 TACATTGCCGGCACCAACGGCACCTCCAACGGCATCATCCCCATGCTGCGCGTCTTCAAC 377840 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||| |||||||| |||||||| || | | | || ||||| |||| Sbjct 377839 AACACGGCTCGCTACGTCGACCAGGGCGGAAACAAGCGCCCCGGCGCTTTCTGCATCTAC 377780 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| ||||| | ||| |||||||||| |||||||||||||| Sbjct 377779 CTGGAGCCGTGGCACGCCGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGCAAG 377720 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | ||| | || || ||| ||||| ||| | || || || || ||| Sbjct 377719 GA---GGAGATCCGCGCCCGTGATCTGTTCATGGCTCTGTGGATACCTGATCTGTTCATG 377663 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || ||||| ||||| ||| | |||||| || | || || | || || || || ||| Sbjct 377662 AAGCGCGTGGAGAAGAACGGCACCTGGACGCTCATGTGCCCTAGCGAGTGCCCTGGCCTG 377603 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAA 94427 ||||| | || | || |||| | |||| | ||||| | |||| | Sbjct 377602 GCCGACTGCTACGGCGAGGAGTTCGAAGCCCTGTACGAAAAGTACGAGAAGGAGGGCCGT 377543 Query 94428 GGCC-AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 |||| || | || | ||| |||||||||| || || | || | ||| | Sbjct 377542 GGCCGCGGCA--CCATCAAGGCTCAGAAGCTGTGGTATGCCATTCTTGAGGCCCAGACCG 377485 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAG 94545 |||| || | |||| ||| ||| |||||| | ||| |||| |||| ||||||| || Sbjct 377484 AGACCGGCAACCCCTTCATGCTGTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAG 377426 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 || | || ||| ||||| || ||||||| |||||||||||||| | | || Sbjct 377425 AACTTGGGCACCATCCGCAGCTCCAACTTGTGCACGGAGATTGTCGAGTACTCGGCCCCT 377366 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 |||||| | ||||| || ||||||| |||||| |||| | |||||||| | || Sbjct 377365 GACGAGGTCGCTGTCTGCAACCTGGCCTCCATTGCCCTGCCGGCTTTCGTGGACCAGTCC 377306 Query 94666 TA-CACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT 94724 | || |||| |||| | ||| | || ||||| | |||| | || Sbjct 377305 AACCAGAGCTACGACTTC-AAGGCCCTGCACGA---TGTGACC--------AAGG-TCGT 377259 Query 94725 CTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAA 94781 || ||||||||| | | || ||| |||| |||||| || || ||||| || Sbjct 377258 TGTGCGCAACCTGAACCGCATCATTGACGTCAACTACTACCCGGTGCCCGAGGCTCGCAA 377199 Query 94782 CTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGT 94841 | ||| || || || ||||| || | || ||||||| | || || || | | Sbjct 377198 CAGCAACATGCGCCACCGTCCCATTGGTGTGGGTATCCAGGGCCTGGCTGATGCCTTTTT 377139 Query 94842 GATGATGCGTCTGCCCTACGACTCTGTCGACGCG-GCGGGTTTGAATTTGAACATATTCG 94900 | | |||| |||| | || || ||| ||| || | | || | | || |||| Sbjct 377138 GGCGCTGCGCATGCCATTTGAGTCGCCCGAGGCGCGCAAG-CTCAACATCCAGATCTTCG 377080 Query 94901 AAAGCATTTATTACGGGGC-CATGAAACAATCCGTCCACTTGGCC-AGATCGGACGGCGG 94958 | | ||| || ||| || | || || || | | ||||| ||||| || ||| | Sbjct 377079 AGACCATCTACCACGCTGCTCTCGAGAC-CTCGAGCGAGCTGGCCGAGATC-GAGGGC-G 377023 Query 94959 GCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTG 95018 | || || |||| | || ||||| || |||||||| | ||| ||| | || Sbjct 377022 TCTACGCG--TCGTACGAGGGCTCGCCTGTGTCGCAGGGCATCCTGCAGCCGGACATGTG 376965 Query 95019 GGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACA 95078 | ||| | |||||||| ||||| |||||| | || || || | | | || || Sbjct 376964 GAATGTCACGCCCTCGGATCTGTGGGACTGGACTGAGCTGCGTGCCAAGATCAAGAAGCA 376905 Query 95079 CGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCT 95138 ||| | ||| ||||| |||| |||||||| |||||||| ||| | |||||||| Sbjct 376904 CGGCATCCGCAACAGTCTGCTGATGGCGCCCATGCCGACGGCCTCGACGTCACAGATCCT 376845 Query 95139 TGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGC 95198 ||||||||||||| || || |||| |||||||||| | ||| | | || ||||| || Sbjct 376844 GGGCAACAACGAGTGCTTTGAGCCCTACACCTCCAACATTTACCAGCGCCGTGTGCTGGC 376785 Query 95199 CGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTG 95256 ||| || |||| || | ||| || || || |||||| ||| || || Sbjct 376784 CGGCGAGTTCCAGGTGGTGAACCCCTGGCTGCTGCGTGACCTG--GTCGAGATGAACCTG 376727 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| ||||| | ||||||| | | || | ||| ||| ||||||||||||| Sbjct 376726 TGGTCCGACAACATGAAGAACCGCATCATTGCCGACGGCGGTTCCATCCAGAACATCCCC 376667 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 | || || || || | |||||||||||||||||| || ||||||||| |||||||| Sbjct 376666 AACATCCCTGACGAGACCAAGGCGCTCTACAAGACGGTCTGGGAGATCTCGCAGCGCACT 376607 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCAT 95411 || | | ||||||| ||| || ||||||| Sbjct 376606 ATTGTGCAGATGGCGGCCGACCGTGGCGCCTTCAT 376572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722705276800