Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq18 228 8e-55 seq25 122 9e-23 seq12 120 3e-22 >seq18 Length=496665 Score = 228 bits (252), Expect = 8e-55 Identities = 844/1301 (65%), Gaps = 65/1301 (5%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||| ||||| || |||||||| |||| ||| || | | || | ||| ||| | | Sbjct 376762 GGTTCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGG 376821 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | ||||| ||||| || || || | ||| | || ||||||||| ||||| Sbjct 376822 GCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCA 376881 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCG-CTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 || || | || || | ||||||| || || | | | | || | | ||| ||| Sbjct 376882 TCAGCAGACTGTTGCGGATGCCGTGCTTCTTGA-TCTTGGCACGCAGCTCAGTCCAGTCC 376940 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 ||||| |||| || || | ||||||||||| ||| | | || ||| || | Sbjct 376941 CACAGATCCGAGGGCGTGACATTCCACATGTCCGGCTGCAGGATGCC----CTG-CGACA 376995 Query 153267 CTGCCG-GCAAACGTACT----GTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCT 153321 | | || || ||||| |||| ||| ||| | |||||| |||| | || Sbjct 376996 CAGGCGAGCCCTCGTACGACGCGTAGACGCCCTCGATCTCGGCCAGCTCGCTCGAGGTCT 377055 Query 153322 CGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGC 153381 |||| || | | ||| ||||| ||| ||| || | ||||| | ||| || Sbjct 377056 CGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTGCGCGCCTCGGGCG 377115 Query 153382 TCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 ||| | |||||||||||| || |||||| || ||||| ||||||||||| || || | Sbjct 377116 ACTCAAATGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCCACACCAA 377175 Query 153442 TGGGTCGATGCTTCTCGTTGCTGC-----GCCTCGCGCTCGCTATGGGATAGTGATTGCG 153496 |||| || || | ||||||| |||||| || | || |||| ||| Sbjct 377176 TGGGACGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACC-----GGGTAGTAGTTGAC 377230 Query 153497 ATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAA 153556 || || || ||| ||||||||||| || || || || | | | || || ||| Sbjct 377231 GTCAATGATGCGGTTCAGGTTGCGCACAACGACCTTGGTCACATCGTGCAGGGCCTTGAA 377290 Query 153557 ATCATAGGTCATTTCGTCGACGCGT--ACGCATCGATTCACGGCAATAGACGCCAGATTA 153614 || ||| || | | ||| || ||| | || |||||| || ||||| || Sbjct 377291 GTCGTAGCTCTGGTTG--GACTGGTCCACGAAAGCCGGCAGGGCAATGGAGGCCAGGTTG 377348 Query 153615 CAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCAT 153674 ||||| || ||| || | | | ||||| || ||||| | ||| | |||| || Sbjct 377349 CAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGTGCACAAGTTGGAGCTG 377408 Query 153675 TTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATG 153734 ||| |||||| || | ||| ||||| ||||| ||||| ||| ||| | |||||| Sbjct 377409 CGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATG 377468 Query 153735 TACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGC- 153790 | || |||||||||| || | || | || | ||| ||| | ||| || Sbjct 377469 AAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATGGCATACCA---CAGCTTCTGAGCC 377525 Query 153791 TCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTC 153850 | | || || | | |||||||| ||||||| |||||||| || ||||| Sbjct 377526 TTGATGGTGCCGCGGCCA-CGGCCCTCCTTCTCGTACTTTTCGTACAGGGCTTCGAACTC 377584 Query 153851 GTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATC 153910 ||||||||||||||||| ||||| || |||| || ||||| |||| ||| | | Sbjct 377585 CTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATGAGCGTCCAGGTGCC 377644 Query 153911 GTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGA---GGTC 153967 || | ||||| |||||||||||| || | ||| || || ||||| | || Sbjct 377645 GTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCACAGAGC---CATGAACAGATC 377701 Query 153968 GCGCGCCTTGCAATCCTCCGCGCCCATGTT---GCGTTTCAGATTGAGCACGCTATAGAT 154024 || || | |||||| ||| ||| ||| ||| | ||| | | ||| Sbjct 377702 ACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCGAGGAACTCAAAGAC 377758 Query 154025 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT---TCCGCCCTG 154081 |||||||||||| || || | ||||| | | || || ||||| ||||||||| Sbjct 377759 GTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTCCGCCCTG 377818 Query 154082 ATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGT 154141 ||||||| ||| || | |||||||||||||||| |||||| | |||| | | ||| Sbjct 377819 GTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAGGT 377878 Query 154142 GCCGTTGGT--CG--AAT---TGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAA 154194 ||||||||| || ||| |||| || || | ||| || | || | ||| | Sbjct 377879 GCCGTTGGTGCCGGCAATGTAGGATCCTG-TGGCACGGATGC------GGTGTATGTTGA 377931 Query 154195 CGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATG 154253 |||||||||||| ||||| ||| || || || ||| || || ||| ||| Sbjct 377932 GGCCAATGCCGCCAGCCGT-CTTGGAAATCATGGCACAGGTCTTGAGGGTGTCGTAAATG 377990 Query 154254 CCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGA 154294 || |||||||| ||||| || | ||| || ||| ||||| Sbjct 377991 CCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGA 378031 >seq25 Length=315089 Score = 122 bits (134), Expect = 9e-23 Identities = 352/525 (67%), Gaps = 29/525 (6%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383 || || ||| | ||||| ||||| | ||||| || | |||||| |||| | Sbjct 43520 GTTCCTTGCATCCGCAAGAAGGCCGATTGGGCTCTGCACTGGATCTCT---GACAAGGAG 43464 Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCG-G 52441 |||| | || ||||| |||| || ||||| || ||||| | | || ||| | | Sbjct 43463 TCCACCTTTGCTCAGCGCTTGGTCGCTTTCGCTGCTGTTGAGGG--TATCTTCTTCAGTG 43406 Query 52442 CAGCTTTGCCG-CCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCA 52500 || || || ||||||| | | || | | |||| | |||||||| ||||| ||| Sbjct 43405 GTGCCTTCTCGTCCATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCT 43346 Query 52501 GCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTAC 52559 ||||||| |||| ||||| ||||| || |||||||| ||||| || ||||| || | Sbjct 43345 CCAACGAGCTGATCTCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTT-- 43288 Query 52560 AAGACGCGCGTGACC-GAAAAATTGGATTCGGACAC-GATCCT-GAG--CATGTTCAAGG 52614 | ||| ||| ||| || | | | | | | || | ||| ||| | | Sbjct 43287 ----CTCGC---ACCTGAAGAACCGCCCTAGCAAGCAGGTCGTCGAGGACATCATTGTCG 43235 Query 52615 AGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCA 52674 | || || ||||| | ||||| | || | || |||||| || ||||| |||| Sbjct 43234 ATGCCGTTCGCATCGAGCAAGAGTTCCTGACCGAGGCTCTGCCGTGCGCTCTGCTCGGCA 43175 Query 52675 TGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 ||||| | || | |||| ||||||| ||||| ||||| || || ||| ||||| Sbjct 43174 TGAACTC-CACCCTCATGAAGCAGTACATTGAGTTCGTGGCTGACCGCCTGCTGGTGGCT 43116 Query 52734 CTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 ||||| || | | ||| |||| || ||| || || || || ||| | ||||| || Sbjct 43115 CTCGG-CAACGAGAAGGTCTTCCGCGTCACCAACCCCTTCGACTTCATGGAGAACATCTC 43057 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | |||||||||||||| ||||||||||| ||||||||||| Sbjct 43056 CCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 43012 >seq12 Length=2460794 Score = 120 bits (132), Expect = 3e-22 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||||||||||||||||||||||| ||| || ||||| ||||| || || | | | Sbjct 54671 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAA 54612 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| || ||||| ||||| || || || || || ||||| ||| | || | || || Sbjct 54611 GATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTGACAT 54553 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||| || | || |||||||| | ||| | ||| || || |||||||| || Sbjct 54552 TG-TCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTG 54494 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 54493 ACAAAGATCTGCAT 54480 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||||||| ||||||||||| || | ||||| ||||| || || || |||| | Sbjct 54899 CTCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAA 54840 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| | ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 54839 GATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTT 54780 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||| || | ||||||||||| | ||| | ||| || || |||||||| || || Sbjct 54779 GTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGAC 54720 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 54719 AAAGATCTGCAT 54708 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | |||| ||| | || | | |||||||| || ||||||||||| || Sbjct 55163 GCCGCCGCGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACT 55104 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| || ||||| || | |||| | ||||| ||||| || || Sbjct 55103 GAGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGG 55044 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | |||| ||| || | ||||| | ||||| Sbjct 55043 AATGCCCTCCTTGTC-CTGAATCTTCGACTTAACGTTG-TCGATCGTGTCCGAAGACTCA 54986 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | ||| | ||| || || || || || || || ||||| |||||| Sbjct 54985 ACCTCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCATG 54935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||| || || || || | | Sbjct 54443 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 54384 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 || || |||||||| || || || || || || ||||| ||| | || | || || Sbjct 54383 AATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTGACAT 54325 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | |||||| ||||||| || | || || || || || || || Sbjct 54324 TG-TCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTG 54266 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 54265 ACGAAGATCTGCAT 54252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261903737600