Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 156 4e-33 seq12 136 4e-27 seq45 104 2e-17 seq76 93.3 4e-14 >seq18 Length=496665 Score = 156 bits (172), Expect = 4e-33 Identities = 863/1350 (64%), Gaps = 58/1350 (4%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 |||| |||||||| ||||||||||| || || || | | | || | |||| |||| | | Sbjct 376762 GGTTCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGG 376821 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 |||| || |||||||||| || || ||||| | ||||| || || |||||| ||||| Sbjct 376822 GCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCA 376881 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCC 146242 ||||| | ||| | | |||||| | | ||||| | || || | | ||| | || Sbjct 376882 TCAGCAGACTGTTGCGGATGCCGTGCTTCTTGATCTTGGCACGCAGCTCAGTCCAGTCCC 376941 Query 146243 ACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC--GCGGAACAG 146300 ||| |||||| ||| || ||| | |||| |||| |||| ||| |||| Sbjct 376942 ACA---GATCCGAGGGCGTGACATTCCACATGTCCGGCTGCAGGATGCCCTGCGACACAG 376998 Query 146301 G-GGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCT- 146358 | | || ||||||||| | || || ||||||| |||||| |||| | || | Sbjct 376999 GCGAGC---CCTCGTACGACGCGTAGACGCCCTCGATCTCGGCCAGCTCGC-TCGAGGTC 377054 Query 146359 TCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCCTCG 146418 || ||||| | ||| |||||||| |||| | ||||| ||| || | ||||| Sbjct 377055 TCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA-GCT--TGCGCGCCTCG 377111 Query 146419 ---CTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACA 146475 || | || || || || |||||| || || || ||||| || || ||| Sbjct 377112 GGCGACTCAAATGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCCACA 377171 Query 146476 CCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCAGCGCCCGCAGTGGGATAGTGGTTGCT 146534 |||| ||| ||||| | |||| ||||| || | | ||| ||| |||| |||| Sbjct 377172 CCAATGGGACGGTGGCGCATGTTGCTGTTGCGAGCCTCGGGCACCGGG-TAGTAGTTGAC 377230 Query 146535 GTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACAT- 146593 ||| ||||| ||| || || ||||| || | || |||| | | ||| || | | Sbjct 377231 GTCAATGATGCGGTTCAGGTTGCGCACAACGACCTTGGTCACATCGTGCAG--GGCCTTG 377288 Query 146594 -AGTCAAATGTTTTAGTTTTA-ACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTT 146651 |||| | | | | ||| | || ||| | | ||| || ||||||| ||| Sbjct 377289 AAGTCGTA-GCTCTGGTTGGACTGGTCCACGAAAGCCGGCAGGGCAATGGAGGCCAGGTT 377347 Query 146652 ACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCA 146711 || || || |||||| | | | |||| |||||||| | ||| | |||| || Sbjct 377348 GCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGTGCACAAGTTGGAGCT 377407 Query 146712 CTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAG 146768 |||| ||||||| || || ||||| || ||| ||||||| |||||||||| || Sbjct 377408 GCGGATGGTGCCCAAGTTCTTCTGGTTGCT---CTTGCGGTTGCAGTGGTCCTTGTACAG 377464 Query 146769 CATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATC-TCTG- 146826 |||| | || ||||| ||| | || ||| | ||| | | || | | |||| Sbjct 377465 CATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATG--GCATACCACAGCTTCTGA 377522 Query 146827 GCCTTTACTTGTCTTTCGTACA-GTTTATTCTTTTCGTATTTCTCGTACAATATTTCAAA 146885 ||||| | | || || || | | ||| ||||| || ||||||| ||| || Sbjct 377523 GCCTTGA-TGGTGCCGCGGCCACGGCCCTCCTTCTCGTACTTTTCGTACAGGGCTTCGAA 377581 Query 146886 --ACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCAT 146943 || | ||||| |||| ||||| || ||| | || || | |||| ||| Sbjct 377582 CTCCTCG--CCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATGAGCGTCCAG 377639 Query 146944 TCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAG 147003 |||| || |||||| | ||| |||| ||| || ||||| || ||| | || Sbjct 377640 GTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCATGAACAGA 377699 Query 147004 TCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATT 147063 || || || | ||||| ||| ||| | || || ||||| || | | Sbjct 377700 TCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACG 377759 Query 147064 TCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGA 147120 || | ||||| ||||||| ||| | || ||||| ||| || |||||||| Sbjct 377760 TCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTCCGCCCTGG 377819 Query 147121 TCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTT- 147179 ||||||| ||| || |||| |||||||| || | ||||| | || |||| ||| | Sbjct 377820 TCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAGGTG 377879 Query 147180 --TGTGGTGCCG---TTGTA------TTGAGCGCTGACGCTTTGCACGCTCAGCCCGAGA 147228 |||||||| |||| | || | || || || | | | || || | Sbjct 377880 CCGTTGGTGCCGGCAATGTAGGATCCTGTGGCACGGATGCGGTGTATGTTGAGGCCAATG 377939 Query 147229 CCTCCGCCCAGATTCGAAATCAAAGCGGA-CTCGTGCAAGGTCTTGTAGATGCCGTCGAT 147287 || || || || ||||||| || | || || | ||| | ||| ||||| ||||| Sbjct 377940 CCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTG-AGGGTGTCGTAAATGCCCTCGAT 377998 Query 147288 GCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGC 147347 |||||| ||||||||| |||||| ||||| ||| || | | ||| || || Sbjct 377999 GCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTGAGCCTGCGGCGTACCGGC 378058 Query 147348 CGCAAACAGCGTGGGGCTGGCGTGCGTGAA 147377 || |||||||| |||||| ||||| Sbjct 378059 GTTGAAAAGCGTGGGTGAGGCGTGAGTGAA 378088 >seq12 Length=2460794 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| |||| || | ||||||||| || || || ||||| || | Sbjct 55162 CCGCCGCGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTG 55103 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||||||||||||| ||||||| |||||||| || || || Sbjct 55102 AGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 55043 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || ||| ||| | |||| |||| ||||||| | ||| || Sbjct 55042 ATGCCCTCCTTGTCCTGAATCTTCGACTTAACGTTG-TCGATCGTGTCCGAAGACTCAAC 54984 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| |||||||| || || || || ||||| |||||| Sbjct 54983 CTCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCATG 54935 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||| ||||| || ||||| || | Sbjct 54934 CCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTG 54875 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| ||||| ||| ||||||| |||||||| || || || Sbjct 54874 AGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 54815 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| ||| ||| | ||||| | | ||| |||| | ||| || Sbjct 54814 ATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTGT-CAATGGTATCCGAAGACTCCAC 54756 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| |||||||||||||| || ||||| |||||||| Sbjct 54755 CTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| |||||||| ||||| |||| || ||||| ||| || || || || ||||| | Sbjct 54671 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAA 54612 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | |||||||| || || || ||||||||||||||| || ||| ||||| | Sbjct 54611 GATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 54552 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| |||| | || || || | || | ||| |||||||||||||| || || Sbjct 54551 GTCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGAC 54492 Query 127102 AAAAATCTGCAT 127113 ||| |||||||| Sbjct 54491 AAAGATCTGCAT 54480 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| ||| | || ||| || || || ||||| |||| | Sbjct 54478 CCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 54419 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| | || | ||||| ||||| || || Sbjct 54418 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGA 54359 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||||| | |||| |||||| | ||| || Sbjct 54358 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACC 54299 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||| || || || || || |||||||| Sbjct 54298 TCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 54252 >seq45 Length=1349219 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 1003368 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1003309 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||||| ||||| || || || || Sbjct 1003308 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGG 1003249 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| ||||||| |||||| Sbjct 1003248 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCCGAGGACTCGAC 1003190 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || | ||| | || ||||| || || || || || || Sbjct 1003189 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 1003151 >seq76 Length=1205562 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||| | |||| |||| || | || ||| || || || ||||| ||| Sbjct 522108 GCACCGCCGCGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 522167 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| || || ||||| || || ||| |||||| |||||||| || || Sbjct 522168 GAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGG 522227 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| ||||||| ||| Sbjct 522228 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCA 522287 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | || || || || || || || || || ||||||||| Sbjct 522288 ACCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 522338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500324499200