Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 >seq12 Length=2460794 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| |||| || || || |||||||| || ||||| ||||| || || || ||| Sbjct 55162 CCGCCGCGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTG 55103 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| |||||||| ||| | ||||| || |||||||| |||||| Sbjct 55102 AGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 55043 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || |||| | || | | | || | || | ||||| |||||||| || Sbjct 55042 ATGCCCTCCTTGTCCTGAA-TCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAAC 54984 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| |||||||| || || || || ||||||||||| Sbjct 54983 CTCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || || || || ||||||||||| || || || Sbjct 54937 ATGCCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCA 54878 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| ||| |||| || ||||| ||| | ||||| || |||||||| ||| Sbjct 54877 CTGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGC 54818 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || ||||| || || || | || | || | ||| || |||||||| Sbjct 54817 GGAATGCCCTCCTTGTCTTGGATCTTCGACTTCA-CGTTGTCAATGGTATCCGAAGACTC 54759 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| |||||||| ||||| || ||||| || ||||| Sbjct 54758 CACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002747996800