Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq18 143 3e-29 seq25 102 1e-16 >seq18 Length=496665 Score = 143 bits (158), Expect = 3e-29 Identities = 521/802 (65%), Gaps = 15/802 (2%) Strand=Plus/Plus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || ||||| || || ||||| || || |||| | ||| || | | |||||| | | Sbjct 377325 GGCAGGGCAATGGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACA 377384 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || ||||| ||||| || || || ||||||||||||||||| || || ||| | Sbjct 377385 ATCTCCGTGCACAAGTTGGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGG 377444 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || |||||||| ||||| | || | || ||||| || |||| || ||||| Sbjct 377445 TTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATG 377504 Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 116663 || | ||| | | || | | || | | ||| || | | || ||||||| ||||||||| Sbjct 377505 GCATACCACAGCTTCTGAGCCTTG-ATGGTGCCGCGGCCACGGCCCTCCTTCTCGTACTT 377563 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCT- 116721 | ||| ||||| || ||||| || || ||| || | || || || || | || Sbjct 377564 TTCGTACAGGGCTTCGAACTCCTC-GCCGTAGCAGTCGGCCAGGCCAGG-GCACTCGCTA 377621 Query 116722 GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 116781 || || | ||| | ||| || || ||| || ||||||||||| || || || ||| Sbjct 377622 GGGCACATGAGCGTCCAGGTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATC 377681 Query 116782 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 116841 || || ||| ||| ||||| || ||| || || | || || || |||| Sbjct 377682 CACAGAGCCATGAACAGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGG 377741 Query 116842 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTG 116901 || | || || | || || ||||||||||| |||||||| | || | || | Sbjct 377742 TCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGG 377801 Query 116902 CG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 || || |||||| || || | ||||| ||| || ||||| ||||| || Sbjct 377802 CGCTTGTTTCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGG 377861 Query 116959 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGACATC 117017 ||||| || | || ||| || || || ||| || | || |||| | || Sbjct 377862 ATGATGCCGTTGGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCTG-TGGCACGGATGCG 377920 Query 117018 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACT 117077 ||| |||| | ||||| || || ||| ||| || || || || | |||| | Sbjct 377921 GTGTATGTTGAGGCCAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTGAGGGT 377980 Query 117078 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 117137 | |||| || || ||||| ||| |||| | ||| |||||||| ||||| || Sbjct 377981 GTCGTAAATGCCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTG 378040 Query 117138 TGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--G 117195 | | || ||||| |||||||| || || |||| ||||| ||| | |||| | Sbjct 378041 AGCCTGCGGCGTACCGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGA--AGGACTTGCTG 378098 Query 117196 GACATCTTATCGTAGGTCTCCA 117217 ||||| | | ||||||||||| Sbjct 378099 GACATGTAGTTGTAGGTCTCCA 378120 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| ||||| |||||||||||||| ||||| |||| ||| || | || ||| Sbjct 376803 TAAATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAG 376862 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 || || |||||||| ||||| || || |||||||||| Sbjct 376863 GCCGTCGGCATGGGCGCCATCAGCAGACTGTTGCGGA 376899 >seq25 Length=315089 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| |||||||||||||| ||||| || || || |||||| |||||| ||||| || || Sbjct 43311 GTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCC 43370 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| || | | || | ||| ||||||||| ||||| ||| Sbjct 43371 TCGCTTCTTCAGCCAGAAGATGGACGAGAAGGCACCACTGAAGAAGATACCCTCAACAGC 43430 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || | | |||| ||||||| Sbjct 43431 AGCGAAAGCGACCAAGCGCTGAGCAAAGG 43459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506586492800