Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq18 150 3e-31 >seq18 Length=496665 Score = 150 bits (166), Expect = 3e-31 Identities = 458/695 (66%), Gaps = 16/695 (2%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGT 203891 |||| || |||||| |||||||| |||| | | || |||||| | | ||| |||| Sbjct 376409 CTTCTCCTGGTCCACAGTGAACTGGATGGGCTGGGCCGC-GGCCTGGGTGCGCAGGTAGT 376467 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 ||||||| ||||| || ||| || ||| ||| | ||||||| | | |||| || Sbjct 376468 ACATGCCTGTCTTGAGACCCAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCA 376527 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGA 204010 | | || ||| |||||||||||| || ||||| ||||| ||| |||||||| || Sbjct 376528 TGGTCGGCTCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCAATG-AAGGCGCCACGG 376586 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTC 204069 || || ||||| | | ||| || |||||| |||||||| ||||||||| | | || | Sbjct 376587 TCGGCCGCCATCTGCACAATAGTGCGCTGCGAGATCTCCCAGACCGTCTTGTAGAGCGCC 376646 Query 204070 TCTGGTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTC 204128 | |||| | | ||| | | | | || || ||| || ||| |||||| || | | Sbjct 376647 T-TGGTCTCGTCAGGGATGT-TGGGGATGTTCTGGATGGAACCGCCGTCGGCAATGATGC 376704 Query 204129 TCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGT 204188 || || | | || ||||| | || | || ||| || |||| ||| ||||| Sbjct 376705 GGTTCTTCATGTTGTCGGACCACAGGTTCATCTCGACCAGGTCACGCAGCAGCCAGGGGT 376764 Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 | | | ||| || || |||| |||||| | || | | | |||| |||| | || | Sbjct 376765 TCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCT 376824 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | || |||||||||||| | ||||| | || |||||| |||||||| |||| | Sbjct 376825 CAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCATCA 376884 Query 204309 GCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA 204368 |||| |||||| | |||| || | || | || ||| |||||||| || Sbjct 376885 GCAGACTGTTGCGGATGCCGTGCTTCTTGATCTTGGCACGCAGCTCAGTCCAGTCCCACA 376944 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 | ||| | || ||||||||| ||| | |||||| || || || || Sbjct 376945 GATCCGAGGGCGTGACATTCCACATGTCCGGCTGCAGGATGCCCTGCGACACAGGCGAGC 377004 Query 204429 CCTTGTACGTCGGATA-AGGCTGATCCTC---TTCTGCCAGCTTGCACGAGGCGGCCATG 204484 ||| ||||| || || | || |||| || ||||||| || ||||| | | Sbjct 377005 CCTCGTACGACGCGTAGACGC----CCTCGATCTCGGCCAGCTCGCTCGAGGTCTCGAGA 377060 Query 204485 GCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 || | ||| |||||||| |||||||| | ||| Sbjct 377061 GCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTT 377095 Score = 122 bits (134), Expect = 1e-22 Identities = 531/825 (64%), Gaps = 20/825 (2%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||||||| ||| ||||||||||| |||||| || | Sbjct 377418 CCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTG 377477 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACT-TGCTT 205041 ||| |||| |||| | |||||| ||||| | |||||| | ||| Sbjct 377478 CCGGTCTCGGTCTGGGCCTCAAGAATGGCATACCACAGCTTCTGAGCCTTGATGGTGCCG 377537 Query 205042 C----ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097 | ||| | ||| | |||||| ||| |||||| || | || || |||| Sbjct 377538 CGGCCACGGCCCTCCTT-----CTCGTACTTTTCGTACAGGGCTTCGAACTCCTCGCCGT 377592 Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCT 205156 | ||| ||| || || || | | || ||||| || | ||| | | | || ||| Sbjct 377593 AGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATGAGCGTCCAGGTGCCGTTCTTCT 377652 Query 205157 TTCACCCTCTCCATAAACAGGTCGCTGATCCACAG-GCCGTAAAACAGATCACGGGCCCT 205215 ||| | || ||| ||||| || |||||||| ||| | || |||||||||||| | Sbjct 377653 C-CACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCATGAA-CAGATCACGGGCGCG 377710 Query 205216 AATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCA 205275 || | || | || ||||||| || ||| || | | | |||||||||||| Sbjct 377711 GATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCGGCGTGCCA 377770 Query 205276 CGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCG 205335 |||||| | | | | | ||||| || | |||||| || |||||||| || ||| Sbjct 377771 CGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTCCGCCCTGGTCGACGTAGCG 377830 Query 205336 AGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCT 205395 || | | |||||| || |||||||| || | | ||||||| ||| ||||| |||| Sbjct 377831 AGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAGGTGCCGTTGGTGCC 377890 Query 205396 GTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACA 205455 | ||| || ||| || | | | | ||| |||||| ||||||| Sbjct 377891 GGCAATGTAGGATCCTGTGGCACGGATGCGGTGTATGTTGAGGCCAATGCCGCCAGCCGT 377950 Query 205456 CTTGGCGATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCG 205514 ||||| ||| ||| || ||||| || ||| ||| ||||| ||||| |||||| Sbjct 377951 CTTGGAAATCATGGCACAGGTCTTG-AGGGTGTCGTAAATGCCCTCGATGCTGTCGTCCT 378009 Query 205515 CCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGC 205573 | |||| ||||| ||||||| | ||||| || || || |||| ||| ||| Sbjct 378010 TGA-TGTCGACCAGGAAGCACGACGACAGCTGAGCCTGCGGCGTACCGGCGTTGAAAAGC 378068 Query 205574 GTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTC 205633 ||||| |||||| ||||| ||| | || | |||||||||||| || | | Sbjct 378069 GTGGGTGAGGCGTGAGTGAAGGACTTGCTGGACATGTAGTTGTAGGTCTCCATAACACGC 378128 Query 205634 TCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCC 205693 || | || | ||| || || | || | | ||| | | ||| ||||| | ||| Sbjct 378129 TCGACATTGTCGCCCCAGATGCCCACAGCCACGCGCATAATCATGTGCTGAGGCCGCTCA 378188 Query 205694 ATCA-CCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 | | | || ||||| ||||||||| |||| | ||| ||||| Sbjct 378189 ACAATGGCGCT-GTTCAGCTTGAGCAGGTAGGAGCGCTCCAGGGT 378232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154404844800