Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12 136 9e-27 seq45 123 6e-23 seq76 109 1e-18 >seq12 Length=2460794 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || ||||| || || |||||||| |||| |||||||||| | || Sbjct 55156 CGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTA 55097 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||| ||||| |||||||| | ||||||||||| || ||| || Sbjct 55096 CGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCC 55037 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||||| | | || || |||| | Sbjct 55036 TCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGC 54977 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || || || |||||||| Sbjct 54976 GTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTG 54939 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| ||||| ||||||||||| |||||||||| | || Sbjct 54928 CGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTA 54869 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||||||||||||||| | ||||||||||| || ||| || Sbjct 54868 CGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCC 54809 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||||||| || | ||| || | | || || |||| | Sbjct 54808 TCCTTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGC 54749 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| || ||||| || || Sbjct 54748 GTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTG 54711 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| ||||||||| | ||||||||| || ||| | ||||| Sbjct 54691 AGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCC 54632 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| || || ||||| || ||||||||||| || || || || ||| Sbjct 54631 TCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 54572 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||| || | | ||| || |||| |||||||||| Sbjct 54571 TGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTC 54512 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| || || Sbjct 54511 TTGCCGGTCAGAGTCTTGACAAAGATCTG 54483 >seq45 Length=1349219 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||||||||| | || || | ||||| Sbjct 1003353 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 1003294 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| || ||||| ||||| || || || || ||| Sbjct 1003293 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCC 1003234 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || ||||| ||||| ||| Sbjct 1003233 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTC 1003174 Query 199598 TTACCCGTGAGAGTTTTCACAAA 199620 || || ||||| || ||||| || Sbjct 1003173 TTGCCAGTGAGGGTCTTCACGAA 1003151 >seq76 Length=1205562 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||| ||||| || || |||||| |||| ||||||||| | | || Sbjct 522117 CGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 522176 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| || ||||||||||| || ||| || Sbjct 522177 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCC 522236 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || || | Sbjct 522237 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGG 522296 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||||||||| || || || || || || Sbjct 522297 GTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 522334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920391605360