Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12 150 2e-31 seq76 147 2e-30 seq45 129 7e-25 >seq12 Length=2460794 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| || | || |||||||||||||| |||||||| Sbjct 54936 TGCCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCAC 54877 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || || |||||||| |||||||| ||||||||||||||||| | || Sbjct 54876 TGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCG 54817 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||||||| ||| | ||| | | | || || || ||| Sbjct 54816 GAATGCCCTCCTTGTCTTGGATCTTCGACTTCA-CGTTGTCAATGGTATCCGAAGACTCC 54758 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||| || ||||| ||||| || || |||||||| ||||| Sbjct 54757 ACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | || ||||||||||| || ||||||||| |||||||| | Sbjct 54695 ACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCC 54636 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || |||||||| || || || | |||||||||||| | ||| | || |||||| Sbjct 54635 ATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTT 54576 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | || || |||||||| |||| |||||| Sbjct 54575 GTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACCTCCAGCGTGAT 54516 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 54515 CGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||||| || |||||||| ||||| ||||||||| || ||||| |||| || Sbjct 54461 CACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTC 54402 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| || | |||||| || || | || | || |||||||||| Sbjct 54401 AAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCCTG 54342 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| | | | ||||| ||| || || || | |||||||| || Sbjct 54341 AATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTT 54282 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || || || || || ||||| ||||| ||| Sbjct 54281 GCCGGTAAGGGTCTTGACGAAGATCTGCATATTG 54248 Score = 125 bits (138), Expect = 8e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| ||| |||||| ||||| |||||||| || || || | Sbjct 55150 CGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCA 55091 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| || || ||||| ||||||||||||||||| | ||| | || ||||||| Sbjct 55090 TCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTG 55031 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||| | ||| | | | |||||| || || || |||| |||||| Sbjct 55030 TCCTGAATCTTCGACTT-AACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGAT 54972 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || || || |||||||| Sbjct 54971 CGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 >seq76 Length=1205562 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| || |||||||| ||||| ||||||||||| || ||||| | Sbjct 522122 ACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 522181 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| |||| |||||||||||| | || | || |||||| Sbjct 522182 GTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTT 522241 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | |||||| || || || || | || || Sbjct 522242 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAAT 522301 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || ||||| || || || || ||||| ||||| Sbjct 522302 GGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 522337 >seq45 Length=1349219 Score = 129 bits (142), Expect = 7e-25 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 1003351 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 1003292 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| |||||| ||||| | ||| | || |||||||||| Sbjct 1003291 CAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTG 1003232 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||||| ||| | | | |||||| || || || |||| |||||||| | Sbjct 1003231 GATCTTGGACTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCT 1003173 Query 46563 TGCCCGTCAGCGTTTTAACAAAG 46585 |||| || || || || || ||| Sbjct 1003172 TGCCAGTGAGGGTCTTCACGAAG 1003150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237834761600