Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq25 176 5e-39 seq76 147 2e-30 seq12 136 4e-27 seq45 127 2e-24 >seq25 Length=315089 Score = 176 bits (194), Expect = 5e-39 Identities = 205/276 (74%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| |||||| || || | |||||||| | ||||||||| ||| || || Sbjct 43627 GTAGGTGTCAATGAGGAGGGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAA 43686 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || ||||| || || || || | ||| ||||||||||| || Sbjct 43687 GCCGTAGAAGCAGCGGGCCTCAGGGACTTGGACCTCGCCACTGAAGCGCTCGACCAGGTT 43746 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| |||||||| |||||| || || ||||| | ||| || ||| | ||| Sbjct 43747 CTCGTTGACAATGCCGTCCGAGGCGGCAAAGAACGCCAGGATGTGGGAGACGAAGTAGCG 43806 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||||||| || | |||||| | |||||||||||||| | |||||| Sbjct 43807 CTCGTCATCGTTCATACGGTTGTTCCAGTCATGGAGATCCTTGGACAGGTCAATCTCCTC 43866 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| ||||| |||||||| || |||||||| Sbjct 43867 GGCAGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 43902 Score = 168 bits (186), Expect = 7e-37 Identities = 357/527 (68%), Gaps = 8/527 (2%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| || || || || || || ||| ||| ||| | Sbjct 43006 TTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 43065 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | | || ||| | |||||| || | || Sbjct 43066 TCCATGAAGTCGAAGGGGTTGGTGACGCGGAAGACCTTCTCGTTGCCGAG-AG--CCACC 43122 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | ||| ||||||||||| ||||| ||| |||| | | || | || ||| Sbjct 43123 AGCAGGCGGTCAGCCACGAACTCAATGTACTGCTTCATGAGGGTGGAGTTCATGCCGAGC 43182 Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 ||| |||| |||||| || ||||| || || |||||||||| || || ||| | Sbjct 43183 AGAGCGCA-CGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATGCGAACGGCATCGACAAT 43241 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 ||| ||| ||| | | ||| || || | | || ||| ||||| || ||| || Sbjct 43242 GATGTCCTCGACGACCTGCTTGCTAGGGCGGTTCTTCAGGTGCGAGAACAGCAGGCAGGC 43301 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 |||||| |||| |||||||| | || || || |||||| ||| |||| ||||| Sbjct 43302 GAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGG 43361 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||| ||||| || || || ||||| || |||| | ||| || ||||||| || Sbjct 43362 CATCAGGCCTCGCTTCTTCAGCCAGAAGATGGACGAGAAGGCACCACTGAAGAAGATACC 43421 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079 ||| || || |||||||| |||| ||||| | || |||| || ||| | |||||| Sbjct 43422 CTCAACAGCAGCGAAAGCGACCAAGCGCTGAGCAAAGGTGGACTCCTTGTCAGAGATCCA 43481 Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | |||| ||||| |||||||| | || ||| || | ||||||| Sbjct 43482 GTGCAGAGCCCAATCGGCCTTCTTGCGGATGCAAGGAACTGTTTCGA 43528 >seq76 Length=1205562 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || ||||| ||| |||| || ||| || | Sbjct 522337 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCG 522278 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| |||||| | ||||| Sbjct 522277 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 522218 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||||||||| |||||||| |||| ||||||||| |||||||||| Sbjct 522217 CAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 522158 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| || ||||| |||| |||||| | | ||||| Sbjct 522157 ATCCAGAAGGAGAGC-ACCCTGCACCTGGTCCTGCGTCTTCGCGGCGG 522111 >seq12 Length=2460794 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| |||||||| |||| || ||| | Sbjct 54249 AATATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCG 54308 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || || || | ||||| ||||| |||||| | || Sbjct 54309 TCTGACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGAT 54368 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || |||| ||| ||||| ||||| || |||| |||||||| | ||||||| Sbjct 54369 CAACAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTAC 54428 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| ||| || |||||| ||||||| || Sbjct 54429 AACATCCAGAAGGAGAGC-ACCCTGCATCTGGTGCTCCG 54466 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || ||||| | || || ||| | | Sbjct 54936 ATGCAAATTTTCGTCAAGACCCTTACCGGCAAGACGATCACGCTGGAGGTTGAGTCTTCG 54995 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| || || | ||||| ||||| ||||| | ||||| Sbjct 54996 GACACGATCGACAACG-TTAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCA 55054 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || ||||||||||| || | || ||||||| |||||||| Sbjct 55055 GCAGCGCTTGATCTTCGCTGGAAAACAGCTGGAGGATGGCCGTACCCTCAGTGACTACAA 55114 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| | |||||||| |||| ||||| | | ||||||| Sbjct 55115 CATCCAGAAGGAGTCTACGCTGCACCTGGTTCTGCGGCTTCGCGGCGGCC 55164 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || ||||| | || || ||| | | Sbjct 54708 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAGTCTTCG 54767 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||| ||||| ||||| | ||||| Sbjct 54768 GATACCATTGACAACG-TGAAGTCGAAGATCCAAGACAAGGAGGGCATTCCGCCAGACCA 54826 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| || | || ||||||| |||||||| Sbjct 54827 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACCCTCAGTGACTACAA 54886 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| ||| || || || ||||||||||| || | || ||| Sbjct 54887 CATCCAAAAGGAGAGC-ACTCTTCACCTGGTGCTGCGTCTGCGTGGTGGC 54935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| ||||| || |||||| ||||| ||||| || || | || ||||| || ||||| Sbjct 54573 GACAAGGAGGGCAT-CCCGCCAGACCAGCAGCGCCTTATCTTTGCTGGCAAGCAACTGGA 54631 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGC 38454 || | ||||| || | |||||||||||| |||||||| ||| || || || |||||| Sbjct 54632 GGATGGCCGCACTCTGAGCGACTACAACATTCAAAAGGAGAGC-ACTCTTCACCTGGTGC 54690 Query 38455 TGCGTTTGAGAGGCGG 38470 | ||| || | || || Sbjct 54691 TACGTCTGCGTGGTGG 54706 >seq45 Length=1349219 Score = 127 bits (140), Expect = 2e-24 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||| ||||| ||||||||| | || |||||| || | |||| | Sbjct 1003151 TTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCGGACACGATC 1003210 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGC 38370 | |||| | || || |||| ||||| ||||| || |||||| ||||||||||| | Sbjct 1003211 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACCAACAGCGCC 1003268 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| ||||| |||||||| || | |||||||| ||||||||||||||| | Sbjct 1003269 TGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGA 1003328 Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| | || || || ||||||| || || | || ||| Sbjct 1003329 AGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGTGGTGGC 1003369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172299827200