Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq18 343 2e-89 seq23 100 4e-16 seq1 93.3 5e-14 seq34 82.4 1e-10 >seq18 Length=496665 Score = 343 bits (380), Expect = 2e-89 Identities = 728/1081 (67%), Gaps = 19/1081 (2%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| ||||| ||||| | || ||||| || || |||||||||||||| Sbjct 90402 TCACCGCTCAGGATAGCGGCCTGGACGGCAGCGCCGTAGGCAACAGCCTCATCGGGGTTG 90461 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || |||| | | | || || |||| Sbjct 90462 ATGCTCTTGTTGGGCTCCTTTCCGTTGAAGTAGTCCGTGATGAGCTTCTGGATGCGCGGG 90521 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||| |||| ||||| || | ||| | || || || ||||| | | Sbjct 90522 ATACGCGTGGAGCCACCAACCAGCACGATCTCGTGCACCTGGGACTTGTCAATCTTGGCG 90581 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || ||||| || | || ||||| | |||| ||||| ||| Sbjct 90582 TCCGTCAGGACACGGTCGACGGGCTGCAGGGTGGAGCGGAAGAGGTCCTGGCACAGCTCC 90641 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || |||||||| ||||| || |||||||||| ||| ||| | | ||| || || Sbjct 90642 TCGAAGCGGGCACGGGTGATGGAAGTGTAGAAATCAATGCCCTCGAAGAGCGAGTCGATC 90701 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | |||||| | || ||||| || ||||| || || || || Sbjct 90702 TCGATGGAGGTCTGGGCAGACGAAGACAGGGTGCGCTTGGCACGCTCGCAGGCAGTGCGG 90761 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT---CTTATGTTTACGTTTAAAC 7426 | |||||| || ||||| | ||| | | || || ||| | || || || ||| Sbjct 90762 AGACGACGCAGAGCACGGGCGTTGGTGCTCAGGTCCTTGCCCTTGTTCTTGCGCTTGAAC 90821 Query 7427 TCTTCAG--AGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 || ||| | | ||| | || | || || || |||||||||| || || | Sbjct 90822 TC--CAGGCATAGGTGGTTGACCAGACGGTTGTCAAAGTCCTCACCACCCAGATGGGTGT 90879 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || ||||||| ||||| || |||||||| | |||||| | | || ||| ||||| | Sbjct 90880 CACCGGCGGTCGACTTGACCTCGAAGATACCATCCTCAATGGTCAGCAGCGACACATCGA 90939 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGA 7604 | |||||||| ||||| || || || || ||||| ||| | || ||||| || | Sbjct 90940 AAGTACCACCGCCCAGATCGAAGATCAGCACGTTGCGCTCGCCCTCGACCTTCTTGTCAA 90999 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664 ||||||| || || || || || || || || || || || || || ||| ||||| | Sbjct 91000 GACCGTAGGCAATGGCAGCGGCAGTGGGCTCGTTGATGATGCGGAGCACGTTGAGGCCGG 91059 Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCG 7724 |||| | || || || || || || || ||||| ||||| ||||| || || || | Sbjct 91060 CAATCAGACCAGCGTCCTTGGTAGCCTGGCGCTGCGAGTCGTTGAAGTACGCAGGAACAG 91119 Query 7725 TTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGG 7784 | ||||| |||| |||| | || || ||||| || ||| | || ||| ||| Sbjct 91120 TCACGACAGCGTTGTTGACGGTGCCGCCCAGGTACGACTCAGCGGTCTCGCGCATCTTGA 91179 Query 7785 TAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAA 7844 | || ||||| || || ||||| || | | ||||| || | || || || || |||| Sbjct 91180 TCAGCACCATGGAGGAGATCTCCTCGGGGGTGAACTGCTTGTTCTCGCCCTTGAACTCAA 91239 Query 7845 CTTCAATCATGGGTTTATCCGCAGCACCGGGG---ATAACCTTATACGACCAATCTTTCA 7901 | ||||| | || || || ||| | || || | ||| ||| ||| |||| Sbjct 91240 CCTCAATGACAGGCTT----GC--CACTGCGGTCAATGATCTTGAACGGGAAATGCTTCA 91293 Query 7902 TATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAA 7961 | || | || |||| |||| | |||||| | || || |||||||| ||||| || | Sbjct 91294 TGTCTGCCTGCACCTCAGGGTCGGCAAACTTGCGGCCAATCAGACGCTTGGCATCGAAGA 91353 Query 7962 CTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCAT 8021 | ||||| | |||||||||||| |||||||| || || || || || | || || Sbjct 91354 CCGTGTTCTGGGGGTTCATGGCAACCTGGTTCTTGGCGGCATCACCAATCAACCGCTC-- 91411 Query 8022 TATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAA 8081 | |||||||| || ||| | || || || || || || || |||||||| ||||||| Sbjct 91412 -CGTGTCCGTAAAGGCCACGAAGGACGGTGTGGTGCGGTTACCCTGGTCGTTGGCAATAA 91470 Query 8082 T 8082 | Sbjct 91471 T 91471 >seq23 Length=2049035 Score = 100 bits (110), Expect = 4e-16 Identities = 218/326 (67%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || | ||||||||||| || || || || || || ||||| |||| ||| Sbjct 1489622 TCGAAGTCCTGGCCACCCAAGTGGGTGTCACCAGCAGTGGCCTTGACGGTGAAGACACCG 1489563 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | ||||| | || || ||||| || ||||| || ||||| || | || || ||| Sbjct 1489562 CCCTGGATGTTCAGCAGGGAGACATCGAAAGTACCGCCGCCCAGATCGTAGATCAGGACG 1489503 Query 7577 TT---CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | | || | ||| || | |||||||| ||||| || || ||||| || Sbjct 1489502 TTGCGCTCCTTGTTGGACTTGCCAGTACCCAGACCGTAGGCGATGGCAGCAGCCGTGGGC 1489443 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || ||||| ||| | || | | || || || || || || Sbjct 1489442 TCGTTGATGATACGCAGGACGTTCATGCCCGAGATGGAACCGGCGTCCTTGGTGGCCTGG 1489383 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| || || || | ||| || | | ||| ||||| || Sbjct 1489382 CGCTGGTTGTCGTTGAAGTAGGCGGGAACGGTGATGACAGCCTTCTCGACCTTCTTGCCA 1489323 Query 7754 AGATACGATTCCGCGATATCTTTCAT 7779 || | || ||||| || ||||| Sbjct 1489322 AGCTTGACCTCGGCGATCTCCTTCAT 1489297 >seq1 Length=2664519 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | || || || ||||| || || || ||||||| ||| Sbjct 725860 TCAAAGTCCTCACCACCAAGATGGGTGTCACCCGCAGTTGCGAGAACCTCAAAGACACCG 725919 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | || || ||||| || ||||||||||| || || | || | | Sbjct 725920 TGGTCAATGGACAGCAGAGACACATCGAAAGTACCACCACCAAGATCGTA---GACAATG 725976 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || ||| | | | |||| || |||||||| |||||||| || || || || || Sbjct 725977 ATC-TGGCGCTCGCCATCGGTCTTGTCCAGACCGTAGGCGATAGCGGCGGCGGTAGGCTC 726035 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||| || || ||||||||| ||||| | ||||| || || || || || Sbjct 726036 GTTGACAATGCGGAGCACGTTCAGGCCCGCAATGACACCGGCATCCTTGGTGGCCTGGCG 726095 Query 7696 TTGCGAATCGTTAAAGTAGGCCGG 7719 || ||||| ||||||||||| Sbjct 726096 CTGGTTGTCGTTGAAGTAGGCCGG 726119 >seq34 Length=1623502 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| || || |||||||| | ||||||||||| || || || | | || || ||| Sbjct 489264 CTTCTCCAGGCCGTACGCCAGCGCCGCCGCCGTCGGCTCGTTGACCACCCGCAGCACGTT 489205 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 ||||| ||||| |||| || || ||||| || || ||||| ||||| ||||| || Sbjct 489204 GAGGCCCGCAATCTGGCCCGCGTCCTTGGTCGCCTGCCGCTGCGAGTCGTTGAAGTACGC 489145 Query 7717 CGGGACCGTTACGACCGCGT 7736 || ||||| || ||||||| Sbjct 489144 AGGCACCGTCACCACCGCGT 489125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132164867200