Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13]
80 sequences; 34,270,891 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq18 152 6e-32
seq19 111 2e-19
>seq18
Length=496665
Score = 152 bits (168), Expect = 6e-32
Identities = 843/1333 (63%), Gaps = 27/1333 (2%)
Strand=Plus/Plus
Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810
|||| ||||| | |||||||| || || ||||| |||||||| ||||| |||| || |
Sbjct 376801 GGTAAATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCG 376860
Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCT 109870
| || || |||||||| ||||| || |||||||| |||| || | | |||| | |
Sbjct 376861 AGGCCGTCGGCATGGGCGCCATCAGCAGACTGTTGCGGATGCCGTGCTTCTTGATCTTGG 376920
Query 109871 CACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTG 109930
|||||| | ||| || | || | | | | | || || |||||| || |
Sbjct 376921 CACGCAGCTCAGTCCAGTCCCACAGATC-CGAGG----GCGTGAC-ATTCCACATGTCCG 376974
Query 109931 GTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGAC-CCCTCAACC 109989
| || || | |||| | |||| || |||| | | | |||| ||| ||||| | |
Sbjct 376975 GCTGCAGGATGCCCTGCGACACAGGCGAGCCCTCGTACGACGCGTA-GACGCCCTCGATC 377033
Query 109990 TCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA 110049
||||||| |||| || | ||| || || || || || || ||||| || || ||
Sbjct 377034 TCGGCCAGCTCGCTCGAGGTCTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATG 377093
Query 110050 TTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-ATAAACACATCCGC 110108
|| | ||| | ||| | || || || | | || | | ||| |||| ||
Sbjct 377094 TTGAGCTTGCGCGCCTCGGGCGACTCAAATGGCATGCG-CAGCGCCAAAAAGGCATCAGC 377152
Query 110109 TAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC 110168
|| ||||| | ||| | ||||||||| || || |||||| | |||||
Sbjct 377153 CAGGCCCTGGATACCCACACCAATGGGACGGTGGCGCATGTTGCTGTTGCGAGCCTCGGG 377212
Query 110169 TACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGAT 110228
|| ||||| ||||| ||| |||| || || || || | || ||| || |
Sbjct 377213 CACCGGGTAGTAGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACGACCTTGGTCAC 377272
Query 110229 TTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGC 110288
|| || || | | | ||| | | | | || | || | || || ||
Sbjct 377273 ATCGTGCAGGGCCTTGAAGTCGTAGCTCTGGTTGGACTGGTCCACGAAAGCCGGCAGGGC 377332
Query 110289 AATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGT 110348
||| || || || ||||| |||| |||||| | | | ||| || | ||| |||||
Sbjct 377333 AATGGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGT 377392
Query 110349 ACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGC 110408
||||||||||| || ||| |||||||||||||| || ||| ||||||
Sbjct 377393 GCACAAGTTGGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTG 377452
Query 110409 ATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468
||||| || |||||| | ||| | || || || ||||| | || |||||||| | |||
Sbjct 377453 GTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATGGCATACCA 377512
Query 110469 TA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527
| | || | || || || || | | || |||| ||||||||| |||||
Sbjct 377513 CAGCTTCTG-AGCCTTGATGGTGCCGCGGCCACGGCCCTCCTTCTCGTACTTTTCGTACA 377571
Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587
| | || || |||| ||||| || | || || || | || || | ||
Sbjct 377572 GGGCTTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATGA 377631
Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647
| | ||| | || || ||| || | |||||||||||| ||||| ||||||| |||
Sbjct 377632 GCGTCCAGGTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCA 377691
Query 110648 AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGT 110707
||| || |||||| || ||| || | || ||||| ||| || || | || |
Sbjct 377692 TGAACAGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACT 377751
Query 110708 CCATGATATCCGAGTGCCATGGTTCGAGAT------AGACAGCGATGGATCCCTTACGAC 110761
| | || || | |||||| || || || | ||| |||| || | |||
Sbjct 377752 CAAAGACGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTT---GT 377808
Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821
|| |||||| || ||||| || ||| |||||||| | ||||| || || || |
Sbjct 377809 TTCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGC 377868
Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881
| | ||| || || || || ||| ||| ||||||| ||| ||| || |
Sbjct 377869 CGTTGGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCTGTGGCACGGATGCGGTGTATGT 377928
Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAA 110940
| ||||| || || ||| ||| ||| ||||| ||| |||| || | |||
Sbjct 377929 TGAGGCCAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCT-TGAGGGTGTCGTAA 377987
Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA 111000
|| || || || || ||||| || | | || ||||| || |||| ||||| |
Sbjct 377988 ATGCCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTGAGCCTGC 378047
Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCT 111058
||||| || || ||||| || || |||| || ||| ||| || |||| |||||| |
Sbjct 378048 GGCGTACCGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGA--AGGACTTGCTGGACATGT 378105
Query 111059 TGTTGTATGTGTC 111071
|||||| || ||
Sbjct 378106 AGTTGTAGGTCTC 378118
>seq19
Length=496586
Score = 111 bits (122), Expect = 2e-19
Identities = 333/502 (66%), Gaps = 18/502 (4%)
Strand=Plus/Minus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| ||||| || || | || || | || ||||| ||| || ||||| |
Sbjct 442268 CGATCGAAGCGACCAGGTCGCATTAAGGCTTTGTCGAGAATGTCGGGGCGATTTGTTCCC 442209
Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619
|| | || |||| || | |||| ||| ||| |||||||| || ||||| | |||
Sbjct 442208 GCCAGAACAACAA--CCTG-CTCAGACGTGTTGAAGCCGTCCATCTCCGTGAGGATCTGA 442152
Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGG----AGGGCATA--CCACCTGCCGAACGCTTC 11673
|| | || ||| ||||| |||||| || || | | |||| | ||| |
Sbjct 442151 TTCAGTGTTGCTTCCCGCTCCTCGTTGCCACCAGAGCTGAAGCGACCTTCGCTACGAGAC 442092
Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
|| | || |||||||| ||||| || | ||| || || | | ||||| |||
Sbjct 442091 CGGCCAATGGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGCTCTTCCGTGC-TGT 442033
Query 11734 T-CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792
| ||||| || || || | ||| |||||||| || |||||||| || || | |
Sbjct 442032 CGCAAAAAGATCGCGCACTCTAGACGCACCAACACCAACAAACATCTCCACAAACTCAGA 441973
Query 11793 GGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAGA 11850
| || |||||||| ||| || ||| ||||| ||||| | || || | || || |||
Sbjct 441972 GCCACTGACACTGAA-GAACGGCACACCTGACTCGCCAGCTGTTGCCTTG-GCCAGAAGA 441915
Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTT 11910
|| ||||| ||||| || | ||| || |||| ||| || || ||||||||||| || |
Sbjct 441914 GTTTTACCAGTACCTGGAGGACCGGCTAGAATGGCTCCGCGTGGGATCTTGGCGCCGAGT 441855
Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970
| | | | ||||| | ||| | |||| ||||| |||| || || ||||||
Sbjct 441854 CGCTGGAACCTTTCAGGTTGCTTCAAGAAGCTCACAAACTCCATAATCTCTAGCTTGGCC 441795
Query 11971 GAGTCGATACCCTCAACATCGG 11992
||| || || |||| ||||
Sbjct 441794 TCGTCCATTCCTGCAACGTCGG 441773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975411024000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |