Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq18 174 2e-38 seq19 105 8e-18 >seq18 Length=496665 Score = 174 bits (192), Expect = 2e-38 Identities = 561/860 (65%), Gaps = 23/860 (3%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| || || |||| ||||| ||||| ||| || | | |||||| | | Sbjct 377325 GGCAGGGCAATGGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACA 377384 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || ||||||||||| || || || ||||| ||||| ||||| ||||| | Sbjct 377385 ATCTCCGTGCACAAGTTGGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGG 377444 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| |||||||| |||||| |||| | || ||||| ||||| | || ||||| Sbjct 377445 TTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATG 377504 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || | ||||| | || | | || | | || || | | || |||||| ||||||||| Sbjct 377505 GCATACCACAGCTTCTGAGCCTTG-ATGGTGCCGCGGCCACGGCCCTCCTTCTCGTACTT 377563 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 | ||| |||||||| |||||||| || ||||| || || || || | || Sbjct 377564 TTCGTACAGGGCTTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGG 377623 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815 || | || | ||| || || ||| || ||||||||||| || || || ||||| Sbjct 377624 GCACATGAGCGTCCAGGTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCA 377683 Query 106816 CAGGG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 ||| | ||| || ||||| | || ||| || | || ||||| || | Sbjct 377684 CAGAGCCATG--AACAGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGG 377741 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC-GATAGATCC--- 106929 || |||||||| | || || |||||||| ||||| || |||| ||| || || || Sbjct 377742 TCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCCAGGTAGA-TGCAGAAAGCGCCGGG 377800 Query 106930 ---CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 ||| | ||||| || | || ||||| || ||| ||| || ||||| |||| Sbjct 377801 GCGCTTGTTTCCGCCC----TGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCA 377856 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045 | || || || || | || || || || || ||| ||| |||| | | Sbjct 377857 TGGGGATGATGCCGTTGGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCTGTGGCACGGA 377916 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 || |||| | ||||| || |||||| ||| || || ||||| | | | Sbjct 377917 TGCGGTGTATGTTGAGGCCAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTGA 377976 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | || || || | ||| ||| |||||| || ||| |||||||| |||| Sbjct 377977 GGGTGTCGTAAATGCCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACA 378036 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 107225 ||| | || ||||| || ||||| || || |||| |||||| ||| | ||| Sbjct 378037 GCTGAGCCTGCGGCGTACCGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGA--AGGACTT 378094 Query 107226 G--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 | |||||| | || ||| ||||||| ||| || | | || || |||||| | Sbjct 378095 GCTGGACATGTAGTTGTAGGTCTCCATAACACGCTCGACATTGTCGCCCCAGATGCCCAC 378154 Query 107284 GGCCACACGCATAAACATGT 107303 ||||| ||||||| ||||| Sbjct 378155 AGCCACGCGCATAATCATGT 378174 >seq19 Length=496586 Score = 105 bits (116), Expect = 8e-18 Identities = 221/321 (69%), Gaps = 10/321 (3%) Strand=Plus/Minus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTT-GATTTTCGCGGGCGATTTCAAAGA 9429 |||||||||||| || || |||| || || || | | ||| || || | |||| | Sbjct 442083 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGCTCTTC-CGTGCTGTCGCAAAAA 442025 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-A 9488 ||||||| || || || || ||||||||||||||||||||||| | | | | | Sbjct 442024 GATCGCGCACTCTAGACGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCACTGA 441965 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || || | ||| || ||| || || || || | || ||| |||||||| ||||| Sbjct 441964 CACTGAA-GAACGGCACACCTGACTCGCCAGCTGTTGCCTTGGCCAGAAGAGTTTTACCA 441906 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9608 |||||||| ||| || || | ||| || ||||| ||||||||||| || | | Sbjct 441905 GTACCTGGAGGACCGGCTAGAATGGCTCCGCGTGGGATCTTGGCGCCGAGTCGCTGGAAC 441846 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCT---TTGGCGGCGTCA 9665 || ||||||||||| | || ||||| ||| | | || ||| ||||| |||| Sbjct 441845 CTTTCAGGTTGCTTCAAGAAGCTCACAAACTC--CATAATC-TCTAGCTTGGCCTCGTCC 441789 Query 9666 ATCCCCTCAACATCGGTAAAC 9686 || || |||| |||| |||| Sbjct 441788 ATTCCTGCAACGTCGGCAAAC 441768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980210019200