Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq76 120 2e-22 seq12 105 4e-18 seq45 93.3 3e-14 >seq76 Length=1205562 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 522129 ACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 522188 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||||||| | || | ||||||||||| Sbjct 522189 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 522248 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | |||| || || |||||| |||| ||| ||||| || Sbjct 522249 ATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTA 522308 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||| || ||||||||||| Sbjct 522309 CCCGTGAGGGTCTTGACGAAGATCTGCAT 522337 >seq12 Length=2460794 Score = 105 bits (116), Expect = 4e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||||| || || |||||||| ||||| || | || |||| ||| Sbjct 54688 ACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCC 54629 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || || || ||||||||| |||| | ||||||||||| | Sbjct 54628 AGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGA 54569 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| || | ||||| | ||| | || || || | || || || Sbjct 54568 ATCTTCGACTTGAC--AT--TGTCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGT 54513 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| ||||||||||||||| Sbjct 54512 CTTGCCGGTCAGAGTCTTGACAAAGATCTGCATA 54479 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||||| || || || ||||| ||||| ||| | || |||| ||| Sbjct 54916 ACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCC 54857 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||||||| |||| | ||||||||||| Sbjct 54856 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTGG 54797 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | || | ||| || || | || || || || Sbjct 54796 ATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCTTG 54737 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || |||||||| ||||||||||||||| Sbjct 54736 CCGGTCAGAGTCTTGACAAAGATCTGCATA 54707 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| ||| | || | || || ||||| || || Sbjct 54448 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 54389 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || || || ||| | || | ||||||||||| ||||||| ||| Sbjct 54388 GCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 54329 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| ||| | |||||| |||| || ||||| || || || || Sbjct 54328 AC--AT--TGTCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGTAAG 54273 Query 34961 AGTCTTCACAAAGATCTGCATATT 34984 ||||| || |||||||||||||| Sbjct 54272 GGTCTTGACGAAGATCTGCATATT 54249 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || |||| |||||||||||||| || || Sbjct 55126 TCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAG 55067 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| |||| | ||||||||||| ||||||| || ||| Sbjct 55066 ATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGAATCTTCGACTTAACGTTG 55007 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | || || || || || || || ||||| || Sbjct 55006 TCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACG 54947 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 54946 AAAATTTGCAT 54936 >seq45 Length=1349219 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1003350 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 1003291 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || || ||||| |||| | ||||||||||| Sbjct 1003290 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 1003231 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || || ||| || || | ||| ||||| || Sbjct 1003230 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTG 1003171 Query 34953 CCCGTGAGAGTCTTCACAAAG 34973 || ||||| |||||||| ||| Sbjct 1003170 CCAGTGAGGGTCTTCACGAAG 1003150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633283482240