Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq12 102 6e-17 >seq12 Length=2460794 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || ||||| || ||||| || || || | | |||| |||| ||||| || || || Sbjct 54898 TCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAG 54839 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 ||||| ||||| || || ||||||||||| || || ||||| || || || || | Sbjct 54838 ATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTG 54779 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | || || || | ||||| || || |||| ||| |||||||| | ||| || ||| Sbjct 54778 TCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACA 54719 Query 101459 AATATCTGCAT 101469 || |||||||| Sbjct 54718 AAGATCTGCAT 54708 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || ||||| ||| | || | | | || || | || Sbjct 54455 ATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCAAGCTG 54396 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | ||||||||||| || |||||||| || || || ||||| || Sbjct 54395 CTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTT 54336 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||||||| || || || ||||||| || |||||||| Sbjct 54335 CGACTTGACATTGTCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 54276 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 54275 AAGGGTCTTGACGAAGATCTGCAT 54252 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| || || || || ||||| || || || | | |||| |||| || Sbjct 55138 TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGT 55079 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| ||||| || || ||||||||||| || || || ||||| || Sbjct 55078 TTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGAATCTTC 55019 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || |||| ||| |||||||| Sbjct 55018 GACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATCGTCTTGCCGGTA 54959 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 54958 AGGGTCTTGACGAAAATTTGCATG 54935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278013628560