Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13]
80 sequences; 34,270,891 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq12 102 6e-17
>seq12
Length=2460794
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338
|| ||||| || ||||| || || || | | |||| |||| ||||| || || ||
Sbjct 54898 TCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAG 54839
Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398
||||| ||||| || || ||||||||||| || || ||||| || || || || |
Sbjct 54838 ATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTG 54779
Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458
|| | || || || | ||||| || || |||| ||| |||||||| | ||| || |||
Sbjct 54778 TCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACA 54719
Query 101459 AATATCTGCAT 101469
|| ||||||||
Sbjct 54718 AAGATCTGCAT 54708
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| ||||| || || || || ||||| ||| | || | | | || || | ||
Sbjct 54455 ATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCAAGCTG 54396
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || || | ||||||||||| || |||||||| || || || ||||| ||
Sbjct 54395 CTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTT 54336
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | |||||||||| || || || ||||||| || ||||||||
Sbjct 54335 CGACTTGACATTGTCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 54276
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 54275 AAGGGTCTTGACGAAGATCTGCAT 54252
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || ||||| || || || || ||||| || || || | | |||| |||| ||
Sbjct 55138 TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGT 55079
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || ||||| ||||| || || ||||||||||| || || || ||||| ||
Sbjct 55078 TTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGAATCTTC 55019
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | ||||| || | || || || || |||| ||| ||||||||
Sbjct 55018 GACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATCGTCTTGCCGGTA 54959
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| || || || || || ||||||
Sbjct 54958 AGGGTCTTGACGAAAATTTGCATG 54935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396278013628560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |