Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq18 471 8e-128 seq25 163 5e-35 >seq18 Length=496665 Score = 471 bits (522), Expect = 8e-128 Identities = 1250/1879 (67%), Gaps = 80/1879 (4%) Strand=Plus/Plus Query 212552 CACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTT 212611 ||| || ||||| | || | || || |||| |||||| || ||||||||||| ||||| Sbjct 376421 CACAGTGAACTGGATGGGCTGGGCCGCGGCCTGGGTGCGCAGGTAGTACATGCCTGTCTT 376480 Query 212612 TAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATTCT 212670 || ||| ||||||| | |||||| |||| ||| |||| || | | Sbjct 376481 GAGACCCAGCTTCCAGCCGGCGAAGTGCAT-GCTGGTGA---TCTT--GCCCA------T 376528 Query 212671 GGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCC 212730 |||| | | || || || | ||| || ||||| |||||| ||||| | | | | Sbjct 376529 GGTCGGC----TCGCGCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCGCCAC 376584 Query 212731 TGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTT 212790 ||| || ||||| | | ||| | ||| |||| |||||| || |||||| ||| Sbjct 376585 GGTCGGCCGCCATCTGCACAATAGTGCGCTGCGAGATCTCCCAGACCGTCTTGTAGAGCG 376644 Query 212791 CTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCA 212847 | ||| || || |||| | |||||||||||| | || || | || ||| | Sbjct 376645 CCTTGGTCTCGTCAGGGATGTTGGGGATGTTCTGGATGGAACCGCCGTCGGCAATGATGC 376704 Query 212848 GCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGG-CACTTGACCAGGTGA 212906 | | | ||||| ||| ||| ||| | | ||||| ||| | ||| Sbjct 376705 GGTTCTT---CATGTTGTCGGACCACAGGTTCATCTCGACCAGGTCACGC-AGCAGCCAG 376760 Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 ||||| || | |||||| || || | ||||| | | |||||||| ||| || |||||| Sbjct 376761 GGGTTCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAG 376820 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||| | || ||||||||| ||||| ||||||| || ||| || |||||||| ||| Sbjct 376821 GGCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCC 376880 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 | ||| |||||||| | | ||||||| ||| | || ||||| | ||||||| Sbjct 376881 ATCAGCAGACTGTTGCGGATGCCGTGCTTCTTGATCTTGGCACGCAGCTCAGTCCAGTCC 376940 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 | |||| ||| | | | || ||||||||||| ||||| |||||| | Sbjct 376941 C---------ACAGATCCGAGGGCGTGACATTCCACATGTCCGGCTGCAGGATGCCCTGC 376991 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 ||| || ||||| ||| || | |||| ||| | || ||||||||||| || Sbjct 376992 GACACAGGCGAGCCCTCGTACGACGCGTAGACGCCCTCGATCTCGGCCAGCTCGCTCGAG 377051 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 | || || ||||||| ||||||||| || || |||| |||||||||| ||||| Sbjct 377052 GTCTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTGCGCGCCTCG 377111 Query 213267 GGGGACGTGAAGGGCATCATCATGCG-TTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 || ||| || ||||| || ||| || |||||||||| ||||||| || | Sbjct 377112 GGCGACTCAAATGGCATGCGCA-GCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCCAC 377170 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 || ||||| | ||| | || ||| ||| |||| ||| || ||||| ||||| Sbjct 377171 ACCAATGGGACGGTGGCGCATGTTGCTGTTGCGAGC-CTCGGGCACCGGGTAGTAGTTGA 377229 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 ||| ||||| ||| |||||||| | || ||||| |||| | |||| | Sbjct 377230 CGTCAATGATGCGGTTCAGGTTGCGCACAACGACCTTGGTCACATCGTGCAGGGCC---- 377285 Query 213445 GATTGAACACGTAGCCCCCGT---CCTG---CACAAACTCAGGCAGGGCGATGCTGGCCA 213498 ||||| |||||| | || ||| ||| || | |||||||| ||| ||||| Sbjct 377286 --TTGAAGTCGTAGCTCTGGTTGGACTGGTCCACGAAAGCCGGCAGGGCAATGGAGGCCA 377343 Query 213499 GGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 ||||||| || || ||||| | || | | | |||||| | ||||| ||||||| |||| Sbjct 377344 GGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGTGCACAAGTTGG 377403 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG-AATCCTTGTAG 213617 || ||||||||||||| ||||| ||| ||| ||||| | |||| |||||||| Sbjct 377404 AGCTGCGGATGGTGCCCAAGTTCTTCTGG-TTGCTCTTGCGGTTGCAGTGGTCCTTGTAC 377462 Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACC 213675 |||||| ||||| |||||||| ||||| | | || | |||| ||| || | | Sbjct 377463 AGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAA--TGGCATACCACAGCTTCT 377520 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 ||||||| | | | || || | | |||||||| |||||| || | | Sbjct 377521 GAGCCTTGATGGTGCCGCGGCCACGGCCCTCCTT---CTCGTACTTTTCGTACAGGGCTT 377577 Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795 ||| || | ||| || | |||| || || || || |||||||| ||| Sbjct 377578 CGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATGAGCGTCC 377637 Query 213796 A-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 | || || || |||| || | || ||||||||| || || | |||||| || ||||| Sbjct 377638 AGGTGCCGTTCTTCTC-CACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCATGAAC 377696 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 || || | || | |||| ||| || ||| |||||||| || || || |||||| Sbjct 377697 AGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAG 377756 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCC 213971 | ||| |||||||||||||||| ||||||| || ||||| || | |||| |||||| Sbjct 377757 ACGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTCCGCCC 377816 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 ||||| || | ||| ||||||||| |||||| | ||| | | |||||||| Sbjct 377817 TGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAG 377876 Query 214032 TGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCT 214091 |||||||| || || || || || || | ||| | | | | ||| ||| || Sbjct 377877 GTGCCGTTGGTGCCGGCAATGTAGGATCCTGTGGCACGGATGCGGTGTATGTTGAGGCCA 377936 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCC 214151 ||||| || || |||||| |||||||| ||| | | | || || ||||| | Sbjct 377937 ATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCG 377996 Query 214152 ATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGAGCC 214210 |||||||| || ||| || | || |||||| ||| |||| | ||||| | || || Sbjct 377997 ATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCT-GAGCCTGCGGCGTACC 378055 Query 214211 AGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGT 214270 | ||||||||||||||| ||| || | | ||||| | || | | ||||||| Sbjct 378056 GGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGAAGGACTTGCTGGACATGTAGTTGTAGGT 378115 Query 214271 CTCCAGGACTGAGGGGA---TGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCA 214326 ||||| || || ||||| | ||| | ||| ||| | ||| | || Sbjct 378116 CTCCATAACACGCTCGACATTGTCGCCC---CAGATGCCCACAGC-CACGCGCATAATCA 378171 Query 214327 TGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCA 214383 ||||||| |||| || | |||| | || | ||||||||||||||||||||||| Sbjct 378172 TGTGCTGAGGCCGCTCAACAATGGCGCTGTTCAG---CTTGAGCAGGTAGGAGCGCTCCA 378228 Query 214384 GAGTCTTGAACCCAAAGTA 214402 | |||||||| |||||||| Sbjct 378229 GGGTCTTGAAGCCAAAGTA 378247 >seq25 Length=315089 Score = 163 bits (180), Expect = 5e-35 Identities = 351/516 (68%), Gaps = 9/516 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || ||| ||||||||||| Sbjct 43008 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 43067 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | | ||| | || ||| | |||||| Sbjct 43068 CATGAAGTCGAAGGGGTTGGTGACGCGGAAGACCT-TCTCGTTGCCGAGAGCCACCAGCA 43126 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| |||| ||||| | |||||||||| ||||||||| | || | Sbjct 43127 GGCGGTCAGCCACGAACTCAATGTACTGCTTCATGAGGGTGGAGTTCATGCCGAGCAGAG 43186 Query 48018 A-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||| || ||||| || || ||||| | ||| || | ||||| || | | || Sbjct 43187 CGCACGG-CAGAGCCTCGGTCAGGAACTCTTGCTCGATGCGAACGGCATCGACAATGATG 43245 Query 48077 TGCTTAACG-CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || ||| | | | |||| ||| ||||||| | | |||| |||||| Sbjct 43246 TCCTCGACGACCTGCTTGCTAGGGCG-GTTCTTCAGGTGCGAGA---ACAGCAGGCAGGC 43301 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| |||||| || ||||| || ||| ||| ||||||||||| ||||| || Sbjct 43302 GAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGG 43361 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || |||||||| || | || ||| | ||| ||||||||| || Sbjct 43362 CATCAGGCCTCGCTTCTTCAGCCAGAAGATGGACGAGAAGGCACCACTGAAGAAGATACC 43421 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || ||||| ||| | | || | || | | | |||||| |||||||| Sbjct 43422 CTCAACAGCAGCGAAAGCGACCAAGCGCTGAGCAAAGGTGGACTCCTTGTCAGAGATCCA 43481 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | || ||||| || |||||||| |||||| || Sbjct 43482 GTGCAGAGCCCAATCGGCCTTCTTGCGGATGCAAGG 43517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531868467200