Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq18 259 9e-64 seq25 129 1e-24 >seq18 Length=496665 Score = 259 bits (286), Expect = 9e-64 Identities = 836/1275 (66%), Gaps = 47/1275 (4%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425 || ||||||||| ||||| || | | |||||| | ||| || | || ||| Sbjct 377004 CCCTCGTACGACGCGTAGACGCCCTCGATCTCGGCCAGCTCGCTCGAGGTCTCGAGAGCA 377063 Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAAGTG 221482 ||||||||||||||||| |||||| ||||||| |||| |||||||| || Sbjct 377064 GCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAG---CTTGCGCGCCTCGGGCGACTCA 377120 Query 221483 AAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542 || ||||| |||||| | |||| | || ||||| ||||| | || | ||| ||||| Sbjct 377121 AATGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCCACACCAATGGGA 377180 Query 221543 CTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | ||| | | ||||| | ||| || || ||||| || || |||||||||| || | Sbjct 377181 CGGTGGCGCATGTTGCTGTTGCGA--GCCTCGGGCACCGGGTAGTAGTTGACGTCAATGA 377238 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACA 221660 || ||||||| || || ||| |||| ||||| | || ||| | | Sbjct 377239 ------TGCGGTTCAGGTTGCGCAC---AACGACCTTGGTCA-CATC--GTGCAGGGCCT 377286 Query 221661 CCAACTCGCCGCCGTCGT-GGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGG 221719 || ||| || | || ||| ||| |||| ||||| ||||||| | ||||||| Sbjct 377287 TGAAGTCGTAGCTCTGGTTGGACTGGT-CCACGAAAGCCGGCAGGGCAATGGAGGCCAGG 377345 Query 221720 TTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTG 221779 || || || || |||||||| | | |||| | ||||| || || | |||| | Sbjct 377346 TTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCGTGCACAAGTTGGAG 377405 Query 221780 CACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGAG 221838 | |||||| |||| || || || || |||||| ||| ||| | |||||||| || Sbjct 377406 CTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCTTGTACAG 377464 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| ||||| ||| ||||| ||| ||| | ||||| | ||| || | |||| | Sbjct 377465 CATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATGGCATACCACAGCT-TCTGAG 377523 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCG--GTATAGAGCATGTC 221955 | | | || | | | ||||| ||| || ||| ||| || || | | Sbjct 377524 CCTTGATGGTGCCGCGGCCACGGCCCTC---CTTCTCGTACTTTTCGTACAGGGCTT--C 377578 Query 221956 AAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCA 222015 |||| || ||||| ||| ||||||| || ||| | || ||||| || |||| Sbjct 377579 GAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATGAGCGTCCA 377638 Query 222016 G-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | ||| ||| | | || | || |||||| || || || |||||||| ||| || | Sbjct 377639 GGTGCC-GTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCACAGAGCCATGAACA 377697 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 |||| | || || ||||||| ||||| ||| || | ||| || | |||||||| | Sbjct 377698 GATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGA 377757 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 ||| ||||||||||||||||| |||| | | ||||||||| |||||||| || |||| Sbjct 377758 CGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTTCCGCCCT 377817 Query 222195 GATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254 | || || | || |||||||| ||| || | || | | |||||||| Sbjct 377818 GGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAGG 377877 Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGTTACTGGCAGACATGC 222311 ||||||||||| |||||| | || ||| | | ||| || | || Sbjct 377878 TGCCGTTGGTGCCGGCAATGTAGGATCCTGTGGCACGGATGCGGTGTATG---TTGAGGC 377934 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | || || || || || || |||||||| ||| ||||||| ||||| ||||||| Sbjct 377935 CAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCCT 377994 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431 | || ||| ||||||| || | ||| || || ||||||| ||||| | | | || Sbjct 377995 CGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTGAGCCTGCGGCGTAC 378054 Query 222432 AGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACG 222491 |||||| || |||||||| |||||| || ||| | || ||||| | ||| | Sbjct 378055 CGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGAAGGACTTGCTGGACATGTAGTTGTAGG 378114 Query 222492 TCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGT 222551 |||| | || | ||| ||||| || || || || | ||| ||||| Sbjct 378115 TCTCCATAACACGCTCGACATTGTCGCCCCAGATGCCCACAGCCACGCGCATAATCATGT 378174 Query 222552 ACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGT 222609 ||| |||| ||| ||| || | | |||| ||||||||| || ||||| || Sbjct 378175 GCTGAGGCCGCTCAACAATGGCGCTGTTCAGCT--TGAGCAGGTAGGAGCGCTCCAGGGT 378232 Query 222610 CTTGAACCCAAAGTA 222624 |||||| |||||||| Sbjct 378233 CTTGAAGCCAAAGTA 378247 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||||||||| ||||| || || | ||||| | | |||||| | ||| || ||| | || Sbjct 376763 GTTCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAGGTGTAGGG 376822 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || ||||||||||||||||||||| | ||| ||| || |||||||| |||| Sbjct 376823 CTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATGGGCGCCAT 376882 Query 221236 CAGCAGACTGTTGCG 221250 ||||||||||||||| Sbjct 376883 CAGCAGACTGTTGCG 376897 >seq25 Length=315089 Score = 129 bits (142), Expect = 1e-24 Identities = 295/447 (66%), Gaps = 7/447 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || || |||||||| ||||| ||||| ||||| ||| | || || ||| Sbjct 43450 AGCGCTTGGTCGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCTCGTCCA 43391 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||| ||| || || |||||||| ||| ||| ||||||||||| ||| Sbjct 43390 TCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTGATCT 43331 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | ||||||||||| |||| || || ||||||||||| | | || ||| || Sbjct 43330 CGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCG---CACCTGAAGA 43274 Query 26057 ACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 || || | |||| || |||| | ||||| || || || |||||| | Sbjct 43273 AC-CGCCCTAGCAAGCAGGTCGTCGAGGACATCATTGTCGATGCCGTTCGCATCGAGCAA 43215 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 ||||| | | ||||||||| || ||||||| Sbjct 43214 GAGTTCCTGACCGAGGCTCTGCCGTGCGCTCTGCTCGGCATGAACTCCACCCTCATGAAG 43155 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTA 26234 || |||||||||| ||||| |||| ||||| ||| | || || || | ||| Sbjct 43154 CAGTACATTGAGTTCGTGGCTGACCGCCTGCTGGTGGC-TCTCGGCAACGAGAAGGTCTT 43096 Query 26235 CAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTT 26294 | | | ||||| |||||||| ||||| ||||| || ||| || ||||||||||| Sbjct 43095 CCGCGTCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTT 43036 Query 26295 CTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| || ||| | |||||||| || || Sbjct 43035 CTTCGAGAAGCGCGTCGGCGAGTACCA 43009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843871155200