Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19 118 1e-21 >seq19 Length=496586 Score = 118 bits (130), Expect = 1e-21 Identities = 281/416 (68%), Gaps = 18/416 (4%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||||||||| || || ||| |||| || ||| |||||||| || || || || Sbjct 441859 GGCGCCAAGATCCCACGCGGAGCCATTCTAGCCGGTCCTCCAGGTACTGGTAAAACTCTT 441918 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394 || ||| || | || || || ||| ||| || ||| || |||| | || | | | Sbjct 441919 CTGGCCAAGGCAACAGCTGGCGAGTCAGGTGTGCCGTTCTTC-AGTGTCAGTGGCTCTGA 441977 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||||||||||||||||||||| ||||| || || |||||||| |||| | || Sbjct 441978 GTTTGTGGAGATGTTTGTTGGTGTTGGTGCGTCTAGAGTGCGCGATCTTTTTGCGACAGC 442037 Query 175455 CCGCGAAAATC-AACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 || ||| | | || || || |||| || || ||||||||||| | ||| | | Sbjct 442038 ACG-GAAGAGCGCCCCTTGCATCATCTTTATCGACGAGATTGATGCCATTGGCCGGTCTC 442096 Query 175514 GCAGCGCTGGT-------GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAA 175566 | |||| ||| | | || || || || ||| | ||| |||| | ||||| Sbjct 442097 GTAGCGAAGGTCGCTTCAGCTCTGGTGGC-AACGAGGAGCGGGAAGCAACACTGAATCAG 442155 Query 175567 CTACTCACCGAGATGGATGGCTTTGACA---ATGAGACTGGCATTGTGGTTATTGCGGCC 175623 | ||||| |||||||| ||||| ||| |||| | || |||| ||| | |||| Sbjct 442156 ATCCTCACGGAGATGGACGGCTTCAACACGTCTGAG-CAGG--TTGTTGTTCTGGCGGGA 442212 Query 175624 ACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || |||||| || || || || | ||| | | || || ||||| || ||||| Sbjct 442213 ACAAATCGCCCCGACATTCTCGACAAAGCCTTAATGCGACCTGGTCGCTTCGATCG 442268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569003430400