Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq12 194 2e-44 seq76 163 4e-35 seq19 107 3e-18 seq1 98.7 1e-15 seq23 87.8 2e-12 >seq12 Length=2460794 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || |||||||| || || || ||||| || ||||||||||| || Sbjct 54936 ATGCAAATTTTCGTCAAGACCCTTACCGGCAAGACGATCACGCTGGAGGTTGAGTCTTCG 54995 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || | |||||||| || ||||| |||||||| || || ||| Sbjct 54996 GACACGATCGACAACGTTAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCAG 55055 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || ||||| |||||||| || ||||| ||||||||| ||| |||||| Sbjct 55056 CAGCGCTTGATCTTCGCTGGAAAACAGCTGGAGGATGGCCGTACCCTCAGTGACTACAAC 55115 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| ||||| ||||||| || || Sbjct 55116 ATCCAGAAGGAGTCTACGCTGCACCTGGTTCTGCGGCTTCGCGGCGG 55162 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| ||||| || || |||||||| || || || ||||| ||||||||||||||||| Sbjct 54251 TATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTC 54310 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| ||||| || |||| | |||||||| || ||||| |||||||| || ||||| Sbjct 54311 TGACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCA 54370 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 || || |||||||| ||||| || |||||||| || || || ||||| || ||||| Sbjct 54371 ACAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTACAA 54430 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | | || |||||| || || || || || || | || || |||||| Sbjct 54431 CATCCAGAAGGAGAGCACCCTGCATCTGGTGCTCCGCCTGCGTGGTGGT 54479 Score = 159 bits (176), Expect = 5e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||||||| || || || || || || || ||||| || ||||| || | Sbjct 54475 GTGGTATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAAT 54534 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || ||||| || |||| | |||||||| || ||||| ||||| || || | Sbjct 54535 CTTCGGATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCAG 54594 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || ||||| |||||||| || || || || ||||| || || || || | Sbjct 54595 ACCAGCAGCGCCTTATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACTCTGAGCGACT 54654 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| ||||||||||| ||||| ||||| || ||| | || || |||||| Sbjct 54655 ACAACATTCAAAAGGAGAGCACTCTTCACCTGGTGCTACGTCTGCGTGGTGGT 54707 >seq76 Length=1205562 Score = 163 bits (180), Expect = 4e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || || ||||||||||||||||| || Sbjct 522337 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCG 522278 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 522277 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 522218 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || |||||| | || |||||| Sbjct 522217 CAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 522158 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || |||||| || || ||||| || || | ||||| || ||||| Sbjct 522157 ATCCAGAAGGAGAGCACCCTGCACCTGGTCCTGCGTCTTCGCGGCGGTGC 522108 >seq19 Length=496586 Score = 107 bits (118), Expect = 3e-18 Identities = 163/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 |||||||| || || |||| |||||| | || |||||||||||||| ||||| || Sbjct 441868 ATCCCACGCGGAGCCATTCTAGCCGGTCCTCCAGGTACTGGTAAAACTCTTCTGGCCAAG 441927 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGGC---GAGTTTCATC 198665 || | || || || || |||| || |||||||||| || | ||| |||||| | Sbjct 441928 GCAACAGCTGGCGAGTCAGGTGT-GCCGTTCTTCAGTG-TCAGTGGCTCTGAGTTT-GTG 441984 Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725 |||||||| |||||||||||||| | || || || || |||| | |||||| ||| Sbjct 441985 GAGATGTTTGTTGGTGTTGGTGCGTCTAGAGTGCGCGATCTTTTTGCGACAGCACG-GAA 442043 Query 198726 AATC-AACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGG 198769 | | || || |||||||| || || |||||||| || |||| Sbjct 442044 GAGCGCCCCTTGCATCATCTTTATCGACGAGATTGATGCCATTGG 442088 >seq1 Length=2664519 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/263 (69%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 195725 CCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGT 195784 || || ||||||| || || || ||||| || ||||| || | || |||||||| Sbjct 726119 CCGGCCTACTTCAACGACAACCAGCGCCAGGCCACCAAGGATGCCGGTGTCATTGCGGGC 726060 Query 195785 CTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGAC 195844 || ||| || | ||| |||| || || || || || || || || || ||||||||| Sbjct 726059 CTGAACGTGCTCCGCATTGTCAACGAGCCTACCGCCGCCGCTATCGCCTACGGTCTGGAC 726000 Query 195845 AAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGAT 195904 |||| | | | || || | || |||| ||| ||||| ||||||||||| || ||| Sbjct 725999 AAGACCGATGGCG-AGCGCCAGAT-CATTG-TCTACGATCTTGGTGGTGGTACTTTCGAT 725943 Query 195905 GTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACT 195964 || || || || ||||| ||| | || || || || ||||| ||||| || Sbjct 725942 GTGTCTCTGCTGTCCATTGACCACGGTGTCTTTGAGGTTCTCGCAACTGCGGGTGACACC 725883 Query 195965 CATCTAGGTGGTGAAGATTTCGA 195987 ||||| |||||||| || || || Sbjct 725882 CATCTTGGTGGTGAGGACTTTGA 725860 >seq23 Length=2049035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/272 (67%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || || || ||||| || |||||||| | | | || Sbjct 1489351 ACCGTTCCCGCCTACTTCAACGACAACCAGCGCCAGGCCACCAAGGACGCCGGTTCCATC 1489410 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 |||| | ||| || | || ||||| || || || || ||||| || || || ||| Sbjct 1489411 TCGGGCATGAACGTCCTGCGTATCATCAACGAGCCCACGGCTGCTGCCATCGCCTACGGT 1489470 Query 195839 CTGGACAAGAACAAGG---ACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 |||| | |||| || | || || || |||||| ||||| || || ||| Sbjct 1489471 CTGGGTACTGGCAAGTCCAACAAGGAGCGCAACGTCCTGATCTACGATCTGGGCGGCGGT 1489530 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || || || || | || ||| | ||| || ||||| |||||| Sbjct 1489531 ACTTTCGATGTCTCCCTGCTGAACATCCAGGGCGGTGTCTTCACCGTCAAGGCCACTGCT 1489590 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || || | ||||| | || ||||| Sbjct 1489591 GGTGACACCCACTTGGGTGGCCAGGACTTCGA 1489622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861742137600