Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq76 129 2e-24 >seq76 Length=1205562 Score = 129 bits (142), Expect = 2e-24 Identities = 194/273 (71%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| ||||||||||| || ||||| || | ||| || ||||| Sbjct 845573 TCTTCTAGAGCCTTGACCAAACGACGCTGGATGTAACCCGTCTCTGCTGTCTTGACAGCA 845514 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT-TCCGGTCGTAG 302690 || ||||| | ||| |||||||| |||| || |||||||| | ||| || || || Sbjct 845513 GTGTCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCGCTCGGGGTCAAG 845454 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | || | | ||| |||| ||||| ||||| ||||| || || | ||| |||||| Sbjct 845453 CCACGCAG-ATACGAGTTCTCCACGAAGCCACGTGCCTCTGGGGAGTAATCGTCCTTGGT 845395 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 |||||| ||||| || | || || | ||| | || || ||| | || || || |||| Sbjct 845394 AAAGTGCGGCAGAGTGCGGTACTTGAACCCGAAGGGAATGCGCCTGCCTTCCACAATCTG 845335 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||| | ||| |||||||||| || || Sbjct 845334 CTGTCCGACCAACGCGGTCATCTGCGAGATGTT 845302 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| | || ||||| |||||||| |||||||| Sbjct 846374 AGAATTTCCTTGAGACGCGGCACACCCAGCGTCACGTT---CTTGGACGACACACCAGCG 846318 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| ||||||||||| || || || | | Sbjct 846317 AAATGGAAGGTGTTCAGCGTCATCTGAGTAGCAGGCTCACCAATCGACTGAGCTGCCAAC 846258 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||| ||||| ||||| || Sbjct 846257 ACACCCACCATCTCTCCAGG 846238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816091386960