Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq18 199 4e-46 seq12 105 6e-18 seq76 95.1 1e-14 seq45 91.5 1e-13 >seq18 Length=496665 Score = 199 bits (220), Expect = 4e-46 Identities = 1027/1610 (64%), Gaps = 60/1610 (4%) Strand=Plus/Plus Query 138433 GCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATC 138492 ||||||||||| || |||||| ||| |||| |||| || || || ||| | | Sbjct 376695 GCAATGATGCGGTTCTTCATGTTGTCGGACCACAGGTTCATCTCGACCAGGTCACGCAGC 376754 Query 138493 AGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTG 138552 || | ||| | ||||| || || ||||||| || || || |||||||||| | Sbjct 376755 AGCCAGGGGTTCACCACCTGGAACTCGCCGGCCAGCACACGGCGCTGGTAAATGTTGGAG 376814 Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| | |||||||| | |||||||| ||||| ||||| | ||| | || ||||||||| Sbjct 376815 GTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAGGCCGTCGGCATG 376874 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG-AGCGACGA 138671 ||||| || ||| || || | ||||| ||||| || | | | ||| | Sbjct 376875 GGCGCCATCAGCAGACTGTTGCGGATGCCGTGCTTCTTGA-TCTTGGCACGCAGCTCAGT 376933 Query 138672 CCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----A 138727 ||||||||||| ||| || | |||||||| || ||| | || ||| | Sbjct 376934 CCAGTCCCACAGATCCGAGGGCGTGACATTCCACATGTCCGGCTGCAGGATGCCCTGCGA 376993 Query 138728 AACTTGCGGGACTGCCTTCGTACGAATCGTATAC-ACCAAACTCTTGCGCCAACTCGTTG 138786 || ||| ||| |||||||| |||| || || ||| | |||| |||| | Sbjct 376994 CACAGGCG----AGCCCTCGTACGACGCGTAGACGCCCTCGATCTCG-GCCAGCTCGCTC 377048 Query 138787 CTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCC 138846 | |||||| ||| | | ||| || || ||| ||||| |||||| || ||| Sbjct 377049 GAGGTCTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTGCGCGCC 377108 Query 138847 TCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCC 138906 |||| ||| | |||||||| ||| | || || || ||||| || || | ||| Sbjct 377109 TCGGGCGACTCAAATGGCATGCGCAGCGCCAAAAAGGCATCAGCCAGGCCCTGGATACCC 377168 Query 138907 ACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTCG---ATAGGATAATA 138962 || || | || || ||||||| || ||| ||||| || ||| | || || || Sbjct 377169 ACACCAATGGGACGGTGGCGCA----TGTTGCTGTTGCGAGCCTCGGGCACCGGGTAGTA 377224 Query 138963 GTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCG 139022 ||| || || ||||| ||| | || ||||| || ||||| ||| || | | Sbjct 377225 GTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACGACCTTGGTCACATCGTGCAGGGC 377284 Query 139023 TTCAAAATCGTATGTGCCCCCGTTG---TCGTCGACG-ACGTCGACAAATTTGTTGACAC 139078 | || ||||| || | |||| | ||| ||| | | || || | | Sbjct 377285 CTTGAAGTCGTA---GCTCTGGTTGGACTGGTCCACGAAAGCCGGCA-------GGGC-- 377332 Query 139079 AAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGG 139138 ||| ||||| | |||||| || || || ||||| ||| | ||| |||||||| || | Sbjct 377333 -AATGGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACAATCTCCG 377391 Query 139139 CACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAG 139198 ||||| || | ||| || || || || | || ||||| || ||||| || Sbjct 377392 TGCACAAGTTGGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGT 377451 Query 139199 CATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGA 139258 || ||||| ||||| | || |||| || || || | ||| | |||| | Sbjct 377452 GGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATGGCATACC 377511 Query 139259 ACAAGTCCCTAG-CTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAG 139317 ||| | | || |||| || ||| | | | | || ||||||||||||||| Sbjct 377512 ACAGCTTCTGAGCCTTGATGGTGCCGC-GGCCACGGCCCTCCTTCTCGTACTTTTCGTAC 377570 Query 139318 AGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATG 139377 || | ||||| || |||||| ||| | || | | |||| | ||| |||||| Sbjct 377571 AGGGCTTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGCTAGGGCACATG 377630 Query 139378 AGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCG 139437 |||| ||| ||||||| || |||||| ||||||||||||| || ||||||| ||| Sbjct 377631 AGCGTCCAGGTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCCACAGAGCC 377690 Query 139438 AACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAA 139497 | | || ||| || || | || ||| || ||| || || ||||| Sbjct 377691 ATGAACAGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAAC 377750 Query 139498 TCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG--- 139554 ||||| ||||| |||||||| || ||||| |||||| | ||||| || ||| Sbjct 377751 TCAAAGACGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGCGCTTGTTT 377810 Query 139555 CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCG 139614 || || || ||||||| || | | || ||||| ||||||| ||| || | ||| Sbjct 377811 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGATGATGCCG 377870 Query 139615 CTCGCTGTTCCGTTGGTGCTACGG--ATG--GGACTGTTGCGAGCTCGGACGTCATGTAC 139670 | | || |||||||||| ||| ||| ||| | || | || |||| | |||| Sbjct 377871 TTGGAGGTGCCGTTGGTGC--CGGCAATGTAGGA-TCCTGTG-GCACGGATGCGGTGTAT 377926 Query 139671 ATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGT 139729 |||| ||| || ||||| | ||||| || | | || || | | || |||| Sbjct 377927 GTTGAGGCCAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTG-AGGGTGTCGT 377985 Query 139730 ATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTA 139789 | || || ||||||||||||| || |||||| ||||| ||||| || || | Sbjct 377986 AAATGCCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTGAGCCT 378045 Query 139790 GTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATC 139848 | ||| ||||| || || || || ||||| ||||| | ||| | ||||| Sbjct 378046 GCGGCGTACCGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGAAGGACTTG-CTGGACATG 378104 Query 139849 AATTCGTACGTTTCGAT--GGCGCTC-ACAATATCCCTTCCGTGGATACCGACAGAGACT 139905 | | ||| || || || ||||| ||| | || || ||| || |||| || Sbjct 378105 TAGTTGTAGGTCTCCATAACACGCTCGACATTGTC---GCCCCAGATGCCCACAGCCACG 378161 Query 139906 CGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCG 139965 ||||| | ||| || || ||| || | | |||| | | || ||| || | Sbjct 378162 CGCATAATCATGTGCTGAGGCCGCTCAACAATGGCGCTGTTCAGCTTGAGCAGGTAGGAG 378221 Query 139966 TTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCGAGCGCATA 140015 ||| ||||||||| ||||||||||| || ||||| ||| | |||| Sbjct 378222 CGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAATTGAAGTCGCGGTCATA 378271 >seq12 Length=2460794 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 54708 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAGTCTTCG 54767 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || || || || || Sbjct 54768 GATACCATTGACAACGTGAAGTCGAAGATCCAAGACAAGGAGGGCATTCCGCCAGACCAG 54827 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || |||||||||||| | | | | || || ||| Sbjct 54828 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACCCTCAGTGACTACAAC 54887 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || |||||||| || || ||| ||||| |||| |||| || ||| Sbjct 54888 ATCCAAAAGGAGAGCACTCTTCACCTGGTGCTGCGTCTGCGTGGTGGC 54935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| || || || ||||| || || || | | Sbjct 54936 ATGCAAATTTTCGTCAAGACCCTTACCGGCAAGACGATCACGCTGGAGGTTGAGTCTTCG 54995 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | || ||| || ||||| || || || || || || || Sbjct 54996 GACACGATCGACAACGTTAAGTCGAA-GATTCAGGACAAGGAGGGCATTCCGCCAGACCA 55054 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || ||||||||||||||| | | | | || || || Sbjct 55055 GCAGCGCTTGATCTTCGCTGGAAAACAGCTGGAGGATGGCCGTACCCTCAGTGACTACAA 55114 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| |||| |||| | ||||| ||| Sbjct 55115 CATCCAGAAGGAGTCTACGCTGCACCTGGTTCTGCGGCTTCGCGGCGGC 55163 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || ||| | | Sbjct 54480 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAATCTTCG 54539 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || || || || Sbjct 54540 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 54599 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || || ||||||||| | | || || || ||| Sbjct 54600 CAGCGCCTTATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACTCTGAGCGACTACAAC 54659 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || ||| ||||| | || |||| || || Sbjct 54660 ATTCAAAAGGAGAGCACTCTTCACCTGGTGCTACGTCTGCGTGGTGG 54706 >seq76 Length=1205562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| || ||||| ||||| || || || | Sbjct 522337 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCG 522278 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 522277 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 522218 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | | | || || || ||| Sbjct 522217 CAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 522158 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||| |||| |||| | ||||| || Sbjct 522157 ATCCAGAAGGAGAGCACCCTGCACCTGGTCCTGCGTCTTCGCGGCGG 522111 >seq45 Length=1349219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || ||||| || ||||||| || || || Sbjct 1003226 AAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAACAGCGCCTGATCTTCGCTGGCAAG 1003285 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | |||| || || ||||| || ||||| || || || ||| Sbjct 1003286 CAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 1003345 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||||| | || |||| || ||| | |||||| Sbjct 1003346 CTGGTGCTCCGCCTGCGTGGTGGCATCATTGAGCC 1003380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897150102400