Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq12 120 6e-22 >seq12 Length=2460794 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | ||| ||||| || || || || || || || Sbjct 54708 TACCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGC 54649 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || || || ||||| || ||||||||||| || | || || ||||| | Sbjct 54648 TCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCG 54589 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| | || ||||| || || ||||| || ||| | Sbjct 54588 GGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCA 54529 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| |||| ||||| ||||| |||||||| Sbjct 54528 CCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | |||||| ||||| || ||||| || || || ||| || | | || Sbjct 55150 CGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCA 55091 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||||||||| ||||| | | || || ||||| || || || ||||| Sbjct 55090 TCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTG 55031 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| | || || || || ||||| || || || || |||| || ||| Sbjct 55030 TCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATC 54971 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || || ||||| Sbjct 54970 GTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| ||||| || || || || || || ||| Sbjct 54934 CCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTG 54875 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || ||||| || ||||| | | || || ||||| || Sbjct 54874 AGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 54815 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| | || || || ||||| ||||| || || || Sbjct 54814 ATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACC 54755 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| |||| ||||| ||||| |||||||| Sbjct 54754 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 ||||| || || || || ||||| || || || | ||||||||||| || || || ||| Sbjct 54409 CCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCC 54350 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || |||||||| | || ||||| || || || ||| | || || || | ||| Sbjct 54349 TTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACCTCGAGAGTG 54290 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || | ||||| || || |||||||| Sbjct 54289 ATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 54252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826193627120