Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq12 132 3e-26 seq76 84.2 1e-11 >seq12 Length=2460794 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||||| ||||| || ||||||||||| ||||| |||||||| ||| Sbjct 54707 ACCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCT 54648 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||| || || ||||| || | |||||||| ||| |||| Sbjct 54647 CAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGG 54588 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| ||| | | |||| ||| | ||| || ||||||| Sbjct 54587 GATGCCCTCCTTGTCCTGAATCTTC-GACTTGACATTGTCGATGGTATCCGAAGATTCCA 54529 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||||||| || || || | || || ||||||||||||||| Sbjct 54528 CCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATA 54479 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || ||||||||||| ||||| |||||||| || | Sbjct 54934 CCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTG 54875 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || |||||||| || ||||| |||||||| ||| |||| Sbjct 54874 AGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 54815 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| ||| || | ||| | ||| || || ||||| Sbjct 54814 ATGCCCTCCTTGTCTTGGATCTTCGACTTC-ACGTTGTCAATGGTATCCGAAGACTCCAC 54756 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||||||| || || || | || || ||||||||||||||| Sbjct 54755 CTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATA 54707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | ||||| ||| || |||||||| || || |||||||| ||| Sbjct 54479 ACCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 54420 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || || || ||||| | ||||| |||||| | || Sbjct 54419 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGG 54360 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| ||| || | ||| ||| | |||||| || || | Sbjct 54359 AATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CATTGTCGATGGTGTCAGACGACTCAA 54301 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 54300 CCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCATA 54251 >seq76 Length=1205562 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || || |||||||| || || |||||||| |||||||| ||||| |||| ||| Sbjct 522129 ACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 522188 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || || || |||| |||||||| ||| | || | || || ||||| Sbjct 522189 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 522248 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | ||| ||| | ||||| || || || || | || || || || Sbjct 522249 ATCTTGGACTTGA-CATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTT 522307 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || || ||||||||||| Sbjct 522308 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 522337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703679513600