Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 1e-13 >seq12 Length=2460794 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || |||||||| |||| |||||| ||| || Sbjct 54483 CAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAATCTTCGGAT 54542 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || ||| ||| || Sbjct 54543 ACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAGCAG 54602 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || ||||| |||| ||||| | ||| || ||| |||||| | Sbjct 54603 CGCCTTATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACTCTGAGCGACTACAACATT 54662 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||| ||||||||||| || Sbjct 54663 CAAAAGGAGAGCACTCTTCACCTGGT 54688 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || |||||||| |||| ||||| ||| || Sbjct 54711 CAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAGTCTTCGGAT 54770 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || || ||| ||| ||| || Sbjct 54771 ACCATTGACAACGTGAAGTCGAAGATCCAAGACAAGGAGGGCATTCCGCCAGACCAGCAG 54830 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||||||||||||| |||| ||||| | || | || |||||| || Sbjct 54831 CGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACCCTCAGTGACTACAACATC 54890 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||| ||||||||||| || Sbjct 54891 CAAAAGGAGAGCACTCTTCACCTGGT 54916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819588633680