Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12 86.0 6e-12 >seq12 Length=2460794 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| |||||||||||||||||||||| || || ||| || || || || || | | | Sbjct 54671 CTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAA 54612 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| || ||||| || ||||| || ||||| || || || ||| || || | | Sbjct 54611 GATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 54552 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | ||||| | | ||||| || | ||| | ||| || || |||||||| || | Sbjct 54551 GTCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGAC 54492 Query 132112 GAAAATCTGCAT 132123 || |||||||| Sbjct 54491 AAAGATCTGCAT 54480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| ||||| ||||||||||| || | |||||| ||| || ||||| || |||| | Sbjct 54899 CTCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAA 54840 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| | ||||| || ||||| || ||||| || || || || || |||| | Sbjct 54839 GATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTT 54780 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | ||||| | | |||||| || | ||| | ||| || || |||||||| || | Sbjct 54779 GTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGAC 54720 Query 132112 GAAAATCTGCAT 132123 || |||||||| Sbjct 54719 AAAGATCTGCAT 54708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610723388800