Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13]
80 sequences; 34,270,891 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq12 138 1e-27
seq76 122 8e-23
seq45 95.1 1e-14
>seq12
Length=2460794
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || ||||| || | || ||||||||||| |||||||| ||
Sbjct 54934 CCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTG 54875
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || ||||||||||| || || || ||||| ||||||||||| | |||
Sbjct 54874 AGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 54815
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || ||||||||| |||||| ||||| |||| | | || || || |||||
Sbjct 54814 ATGCCCTCCTTGTCTTGGATCTTCGACTTCA-CGTTGTCAATGGTATCCGAAGACTCCAC 54756
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||||||||| || || |||| ||| || ||||| ||||||||
Sbjct 54755 CTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || | || |||||||||||||||||||| ||| |
Sbjct 54706 CCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 54647
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||| ||||| || ||||| || | ||||||||||| | ||
Sbjct 54646 AGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGG 54587
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| ||||| ||| | | | | | || || |||||||||
Sbjct 54586 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACC 54527
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||||||| || || |||| ||| || ||||| ||||||||
Sbjct 54526 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| || || | || || |||| || | |||| |||||| || |||||||| ||
Sbjct 55162 CCGCCGCGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTG 55103
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || |||||||| || || || || ||||| ||||||||||| | |||
Sbjct 55102 AGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 55043
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || |||||||||| ||||| ||| | |||| | | |||||| || || ||
Sbjct 55042 ATGCCCTCCTTGTCCTGAATCTTCGACTT-AACGTTGTCGATCGTGTCCGAAGACTCAAC 54984
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||||||||| || || || | || || || || || |||||
Sbjct 54983 CTCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936
>seq76
Length=1205562
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
|| |||||||| || |||||||| |||| | ||| || |||| ||||||||||| |||
Sbjct 522141 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCC 522200
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
|| || |||| ||||||||||| | |||| || |||||||||| |||||| |||
Sbjct 522201 GCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 522260
Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719
| | | | | |||||| || || ||||| | || || || |||||||| | ||
Sbjct 522261 ACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTGAGGGTC 522320
Query 35720 TTCACAAATATCTGCAT 35736
|| || || ||||||||
Sbjct 522321 TTGACGAAGATCTGCAT 522337
>seq45
Length=1349219
Score = 95.1 bits (104), Expect = 1e-14
Identities = 133/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || | || ||||||||||| || || ||
Sbjct 1003333 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAA 1003274
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||| ||||| | || | || |||||||||| |||||| ||| | ||
Sbjct 1003273 GATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1003215
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || || ||||||| ||||| || || || || | || ||||
Sbjct 1003214 TGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCA 1003155
Query 35724 CAAA 35727
| ||
Sbjct 1003154 CGAA 1003151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793149206400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |