Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq18 165 8e-36 seq12 125 7e-24 seq76 114 1e-20 seq45 93.3 4e-14 >seq18 Length=496665 Score = 165 bits (182), Expect = 8e-36 Identities = 910/1423 (64%), Gaps = 41/1423 (3%) Strand=Plus/Minus Query 7563 TCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGC-CGCCT 7621 ||| |||||| | |||||||||| |||||||| ||||| || || || || | Sbjct 378179 TCAGCACATGATTATGCGCGTGGCTGTGGGCATCTGGGGCGA---CAATGTCGAGCGTGT 378123 Query 7622 T--GGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTT 7679 | ||| || ||| | ||||| || || || ||||| || ||||| | || Sbjct 378122 TATGGAGACCTACAACTACATGTCCAGCAAGTCCTTCACTCACGCCTCACCCACGCTTTT 378063 Query 7680 TGCCGCGGGCACAAACGC-GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAG 7738 ||| || || ||| | |||| |||| ||||| || || | ||| || | Sbjct 378062 CAACGCCGGTACGC-CGCAGGCTCAGCTGTCGTCGTGCTTCCTGGTCGACATCAAGGACG 378004 Query 7739 ACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC 7797 |||||||||| ||||||||| |||| || | || || |||| |||||| || ||||| Sbjct 378003 ACAGCATCGAGGGCATTTACGACACCCT-CAAGACCTGTGCCATGATTTCC-AAGACGGC 377946 Query 7798 -GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCAC 7856 ||||| || || || ||| || || | | || |||| || | ||| | ||| Sbjct 377945 TGGCGGCATTGGCCTCAACATACACCGCATCCGTGCCACAGGATCCTACATTGCCGGCAC 377886 Query 7857 CAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACA 7916 |||||| | ||| ||| | |||||| ||||||| ||||| ||| ||| || | Sbjct 377885 CAACGGCACCTCCAACGGCATCATCCCCATGCTGCGCGTCTTCAACAACACGGCTCGCTA 377826 Query 7917 TGTAGACCAGGGGGGA---AAGCGCAAAGGCGC-CGCTGCCATCTATTTGGAGCCGTGGC 7972 || |||||||| ||| |||||| ||||| ||| |||||| |||||||||||| Sbjct 377825 CGTCGACCAGGGCGGAAACAAGCGCCCCGGCGCTTTCTG-CATCTACCTGGAGCCGTGGC 377767 Query 7973 ACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAG 8032 |||| ||| | | | | || | ||||| ||| || || || | | | Sbjct 377766 ACGCCGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGCG 377707 Query 8033 CGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCG 8092 | || ||||| ||| | | ||||| | || |||||||| |||| |||||| | Sbjct 377706 CCCGTGATCTGTTCATGGCTCTGTGGATACCTGATCTGTTCATGAAGCGCGTGGAGAAGA 377647 Query 8093 AC-GCACAATGGTCGCTCATGTGCCCCGATCG-TTGCCCTTTATTAAAAAACGTTTACGG 8150 || |||| ||| |||||||||| ||| | || |||||| | || ||||| Sbjct 377646 ACGGCAC-CTGGACGCTCATGTG-CCCTAGCGAGTGCCCTGGCCTGGCCGACTGCTACGG 377589 Query 8151 TTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCA-AG 8209 | || ||| ||||| || | ||||| | || ||| ||| |||||| Sbjct 377588 CGAGGAGTTCGAAGCCCTGTACGAAAAGTACGAGAAGGAGGGC-CGTGGCCGCGGCACCA 377530 Query 8210 TGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGT 8269 | || || | | ||| |||||| | || || | ||| ||||| | || | Sbjct 377529 TCAAGGCTCAGAAGCTGTGGTATGCCATTCTTGAGGCCCAGACCGAGACCGGCAACCCCT 377470 Query 8270 ACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTT 8329 |||||||||||| ||| |||||| ||| ||||| || | ||| |||||||||| Sbjct 377469 TCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGCACCATCC 377410 Query 8330 GTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTT 8389 | || ||| ||||| | || ||||| ||||| || || ||||| || || || | Sbjct 377409 GCAGCTCCAACTTGTGCACGGAGATTGTCGAGTACTCGGCCCCTGACGAGGTCGCTGTCT 377350 Query 8390 GCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAA--ACACTTACGA 8447 |||| || || || | | || ||||| || | | ||| | | ||||| Sbjct 377349 GCAACCTGGCCTCCATTGCCCTGCCGGCTTTCGTGGACC--AGTCCAACCAGAGCTACGA 377292 Query 8448 CTTTGAACAATTGAAAAACGCCGTG--CAAGTGACG--GTACGCAATTTAGATCGCATCA 8503 ||| | || ||| ||| |||| | || || ||||| | | ||||||| Sbjct 377291 CTTCAAGGCCCTG---CACGATGTGACCAAG-GTCGTTGTGCGCAACCTGAACCGCATCA 377236 Query 8504 TTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCG 8563 |||| ||||| | || || || || || ||| |||||||||||| | ||| Sbjct 377235 TTGACGTCAACTACTACCCGGTGCCCGAGGCTCGCAACAGCAACATGCGCCACCGTCCCA 377176 Query 8564 TTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAA 8623 |||| ||||| | || || ||||| || || ||| | ||||| | || | || Sbjct 377175 TTGGTGTGGGTATCCAGGGCCTGGCTGATGCCTTTTTGGCGCTGCGCATGCCATTTGAGT 377116 Query 8624 GCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAG 8683 | || ||||||| ||||||||| | || || || | || ||| || | | Sbjct 377115 CGCCCGAGGCGCGCAAGCTCAACATCCAGATCTTCGAGACCATCTACCACGCTGCTCTCG 377056 Query 8684 AAGCCAGCTGTCAACTTGCCCGAGA-ATTGGGCACGTACGAATCGTACGCGGGCAGCCCT 8742 || | | | | || |||||| |||| |||| ||||||| |||| ||| Sbjct 377055 -AGACCTCGAGCGAGCTGGCCGAGATCGAGGGCGTCTACGCGTCGTACGAGGGCTCGCCT 376997 Query 8743 GCCAGCCGC--GGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGA 8800 | | ||| || || |||| ||||||||||||||||||||| | | ||||| Sbjct 376996 G--TGTCGCAGGGCATCCTGCAGCCGGACATGTGGAATGTCACGCCCTCGGATCTGTGGG 376939 Query 8801 ATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGG 8860 | |||| || || ||| || | ||| | ||||| ||| || ||| Sbjct 376938 ACTGGACTGAGCTGCGTGCCAAGATCAAGAAGCACGGCATCCGCAACAGTCTGCTGATGG 376879 Query 8861 CTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGT 8920 | |||||| || ||| |||| | || || |||| |||||||| | ||||||||| | Sbjct 376878 CGCCCATGCCGACGGCCTCGACGTCACAGATCCTGGGCAACAACGAGTGCTTTGAGCCCT 376819 Query 8921 TCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 |||| |||| | ||| | | || ||| |||||||||| || Sbjct 376818 ACACCTCCAACATTTACCAGCGCCGTGTGCTGGCCGGCGAGTT 376776 >seq12 Length=2460794 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || ||| ||||| || ||||||||||||| | |||| | Sbjct 54469 AGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 54410 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||| | ||||| ||||| || || ||||| || Sbjct 54409 CCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCC 54350 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | ||||| ||||| || || |||||||| Sbjct 54349 TTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACCTCGAGAGTG 54290 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| | || || ||||| || ||||| ||| Sbjct 54289 ATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCATATTG 54248 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| ||||| || ||||| || ||||||||||| | | ||| | Sbjct 55153 AGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGG 55094 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||||||| || || || ||||| |||||||| || ||||| ||||| || Sbjct 55093 CCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCC 55034 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | ||||| || || || || || || || Sbjct 55033 TTGTCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTG 54974 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || |||||||||||||| Sbjct 54973 ATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||| |||||||||||||||||||||| | ||| | Sbjct 54697 AGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGG 54638 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 54637 CCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 54578 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | || || || |||||||| || || || Sbjct 54577 TTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACCTCCAGCGTG 54518 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||| || || || || ||||| Sbjct 54517 ATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||| |||||||| ||||||||||| | | ||| | Sbjct 54925 AGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGG 54866 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || ||||| |||||||| || ||||| ||||| || Sbjct 54865 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCC 54806 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || ||| | || || || || ||||| || || || Sbjct 54805 TTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGTG 54746 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||| || || || || ||||| Sbjct 54745 ATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 >seq76 Length=1205562 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||| ||||| || |||||||||||| | |||| | Sbjct 522120 AGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 522179 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || || || ||||| || Sbjct 522180 CCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCC 522239 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || || || ||||| ||| Sbjct 522240 TTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTA 522299 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || | || || ||||| || ||||| Sbjct 522300 ATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 522337 >seq45 Length=1349219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||||| ||||| || |||||||||||| | |||| | Sbjct 1003359 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 1003300 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| ||||| || || ||||| ||||| || Sbjct 1003299 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCC 1003240 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || || || || | || Sbjct 1003239 TTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTG 1003180 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAA 134704 ||||| || || || | || || ||||| Sbjct 1003179 ATGGTCTTGCCAGTGAGGGTCTTCACGAA 1003151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397894601600