Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq18 116 1e-20 seq25 102 3e-16 >seq18 Length=496665 Score = 116 bits (128), Expect = 1e-20 Identities = 220/320 (69%), Gaps = 8/320 (3%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| || || ||| | || || ||||||||| ||||||||||||||| || || || Sbjct 377870 CGGCATCATCCCCATGCTGCGCGTCTTCAACAACACGGCTCGCTACGTCGACCAGGGCGG 377811 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087 ||| ||||| || || ||| ||||||||||||||||||||||||||| | |||| Sbjct 377810 AAACAAGCGCCCCGGCGCTTTCTGCATCTACCTGGAGCCGTGGCACGCCGACGTCTTTGA 377751 Query 255088 ACGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTA 255147 ||| | ||| | | || ||||| |||||| | |||||| || | | Sbjct 377750 ---GTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGCGCCCGTGATCTGTT 377694 Query 255148 CACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGA 255206 || ||| | ||| |||||||| ||| |||||||| | || ||| ||||||| Sbjct 377693 CATGGCTCTGTGGATACCTGATCTGTTCATGAAGCGCGTGGAGAAGA-ACGGCACCTGGA 377635 Query 255207 GCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAA 255266 |||||||| || | | | || || || | ||||| | || || ||||| ||| Sbjct 377634 CGCTCATGTGCCCTAGCGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTCGAAG 377575 Query 255267 AACTGTATCTGGAGTACGAG 255286 ||||| |||||||| Sbjct 377574 CCCTGTACGAAAAGTACGAG 377555 >seq25 Length=315089 Score = 102 bits (112), Expect = 3e-16 Identities = 120/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| | |||||||| |||| || || || | || || || || || || | ||| Sbjct 43450 AGCGCTTGGTCGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGT-GCCTTCTCGTCC 43392 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| |||| ||||| || || |||| |||||||||||| ||||| |||||| Sbjct 43391 ATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTGATC 43332 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 || ||||||||| |||| |||||||||||| || || Sbjct 43331 TCGCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCT 43291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588334371955600