Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq19 113 6e-20 >seq19 Length=496586 Score = 113 bits (124), Expect = 6e-20 Identities = 280/416 (67%), Gaps = 18/416 (4%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 ||||| || ||||| || || | | ||| | || || || || |||||| || || Sbjct 442268 CGATCGAAGCGACCAGGTCGCATTAAGGCTTTGTCGAGAATGTCGGGGCGATTTGTTCCC 442209 Query 11510 GCAATAACCACAATGCCAGTCTCAT---TGTCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 || | ||| |||| || | |||| ||| ||||| |||||||| ||||| | ||| Sbjct 442208 GCCAGAACAACAA--CCTG-CTCAGACGTGTTGAAGCCGTCCATCTCCGTGAGGATCTGA 442152 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC-------ACCAGCACTGCGTTG 11619 || | |||| ||| | ||| || || || || | | ||| | || || Sbjct 442151 TTCAGTGTTGCTTCCCGCTCCTCGTT-GCCACCAGAGCTGAAGCGACCTTCGCTACGAGA 442093 Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTT-GATTTTCGCGGGCGA 11678 | ||| | ||||||||||| || || |||| || || || | | ||| || || Sbjct 442092 CCGGCCAATGGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGCTCTTC-CGTGCTG 442034 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 | |||| |||||||| || || ||||| ||||||||||||||||||||||| | | Sbjct 442033 TCGCAAAAAGATCGCGCACTCTAGACGCACCAACACCAACAAACATCTCCACAAACTCAG 441974 Query 11739 CGGCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | || | |||| || ||| || ||| ||| || || || | || ||| || || Sbjct 441973 AGCCACTGACACT-GAAGAACGGCACACCTGACTCGCCAGCTGTTGCCTTGGCCAGAAGA 441915 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || || || |||||||| ||| || |||| ||| || || ||||||||||| || Sbjct 441914 GTTTTACCAGTACCTGGAGGACCGGCTAGAATGGCTCCGCGTGGGATCTTGGCGCC 441859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031371968000