Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18 165 1e-35 seq25 107 2e-18 >seq18 Length=496665 Score = 165 bits (182), Expect = 1e-35 Identities = 526/803 (66%), Gaps = 17/803 (2%) Strand=Plus/Plus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || ||||| || || ||||| || || |||| | ||| || | | |||||| | | Sbjct 377325 GGCAGGGCAATGGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGGGCCGAGTACTCGACA 377384 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || |||||||||||||| || || ||||||||||||||||| || || ||| | Sbjct 377385 ATCTCCGTGCACAAGTTGGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGG 377444 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || |||||||| |||||| | || | || ||||| || |||| || ||||| Sbjct 377445 TTGCAGTGGTCCTTGTACAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCAAGAATG 377504 Query 118884 GCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 || | ||| | | || | ||| | ||| || | | || ||||| | ||||||||| Sbjct 377505 GCATACCACAGCTTCTG-AGCCTTGATGGTGCCGCGGCCACGGCCCTCCTTCTCGTACTT 377563 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT-G 119001 | ||| |||||||| ||||| || || | || | || || || || | || | Sbjct 377564 TTCGTACAGGGCTTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG-GCACTCGCTAG 377622 Query 119002 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061 |||| | ||| | ||| || || ||| || ||||||||||| || || || |||| Sbjct 377623 GGCACATGAGCGTCCAGGTGCCGTTCTTCTCCACGCGCTTCATGAACAGATCAGGTATCC 377682 Query 119062 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 119121 | || ||| ||| ||||| || ||| || || | || || || |||| | Sbjct 377683 ACAGAGCCATGAACAGATCACGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 377742 Query 119122 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 119181 | | || || | || || ||||||||||| |||||||| | || | || | Sbjct 377743 CGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCCAGGTAGATGCAGAAAGCGCCGGGGC 377802 Query 119182 G---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | || |||||| || || | || ||| ||| || || || ||||| || | Sbjct 377803 GCTTGTTTCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGCAGCATGGGGA 377862 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATC 119296 |||| || | ||| ||| || || || || || || || |||| | || Sbjct 377863 TGATGCCGTTGGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCT--GTGGCACGGATGCG 377920 Query 119297 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 119356 ||| |||| | ||||| || || ||| ||| || || || || | |||| | Sbjct 377921 GTGTATGTTGAGGCCAATGCCGCCAGCCGTCTTGGAAATCATGGCACAGGTCTTGAGGGT 377980 Query 119357 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 119416 | |||| || || ||||| ||| |||| | ||| |||||||| ||||| || Sbjct 377981 GTCGTAAATGCCCTCGATGCTGTCGTCCTTGATGTCGACCAGGAAGCACGACGACAGCTG 378040 Query 119417 AGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG-- 119473 | ||||| || ||||| |||||||| || || |||| ||||| ||| | |||| Sbjct 378041 A-GCCTGCGGCGTACCGGCGTTGAAAAGCGTGGGTGAGGCGTGAGTGA--AGGACTTGCT 378097 Query 119474 GGACATCTTGTCGTAGGTCTCCA 119496 |||||| | || ||||||||||| Sbjct 378098 GGACATGTAGTTGTAGGTCTCCA 378120 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || |||| ||||| |||||||||||||| ||||| |||| ||| || | || ||| Sbjct 376803 TAAATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGTGACGTCGAG 376862 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 || || |||||||| ||||| || || ||||| |||| Sbjct 376863 GCCGTCGGCATGGGCGCCATCAGCAGACTGTTGCGGA 376899 >seq25 Length=315089 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||||||||| ||||| || || || |||||| |||||| ||||| || || Sbjct 43311 GTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCC 43370 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| |||||| || | | || | ||| ||||||||| ||||| ||| Sbjct 43371 TCGCTTCTTCAGCCAGAAGATGGACGAGAAGGCACCACTGAAGAAGATACCCTCAACAGC 43430 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| || | | |||| |||||||| Sbjct 43431 AGCGAAAGCGACCAAGCGCTGAGCAAAGG 43459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434581564800