Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq25 147 3e-30 seq19 104 3e-17 >seq25 Length=315089 Score = 147 bits (162), Expect = 3e-30 Identities = 167/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 94727 TCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACA 94785 || |||||||||| || || | ||||| || ||||||||| || | ||| | | ||| Sbjct 43528 TCGAAACAGTTCCTTGCATCCGCAAGAAGGCCGATTGGGCTCTGCACTGGATCTCTGACA 43469 Query 94786 A--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCT 94843 | |||| |||||||| |||| | |||| || || ||||||||||||||||| Sbjct 43468 AGGAGTCCA---CCTTTGCTCAGCGCTTGGTCGCTTTCGCTGCTGTTGAGGGTATCTTCT 43412 Query 94844 TCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCT 94903 || |||| |||||| | || | ||||| ||||||||||| || ||||| ||||| Sbjct 43411 TCAGTGGTGCCTTCTCGTCCATCTTCTGGCTGAAGAAGCGAGGCCTGATGCCCGGTCTGA 43352 Query 94904 GCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||||||||||| ||||| ||||||||||| || ||| Sbjct 43351 CCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGTCTGCAC 43311 >seq19 Length=496586 Score = 104 bits (114), Expect = 3e-17 Identities = 225/324 (69%), Gaps = 16/324 (5%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTT-GATTTTCGCGAGCGACTTCAAAGA 9761 |||||||||||| || || |||| |||||| || | | ||| || || |||| | Sbjct 442083 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGCTCTTC-CGTGCTGTCGCAAAAA 442025 Query 9762 GATCCCGTACACGCTTGGCGCCC--ACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 |||| || ||| || | ||| | ||||||||||||||||||||||| | | | | Sbjct 442024 GATCGCG--CACTCTAGACGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCACT 441967 Query 9820 -ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 ||| || | ||| || ||| || || || || | || ||| |||||||| |||| Sbjct 441966 GACACTGAA-GAACGGCACACCTGACTCGCCAGCTGTTGCCTTGGCCAGAAGAGTTTTAC 441908 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938 | |||||||| ||| || || | ||| || ||||| ||||||||||| || | Sbjct 441907 CAGTACCTGGAGGACCGGCTAGAATGGCTCCGCGTGGGATCTTGGCGCCGAGTCGCTGGA 441848 Query 9939 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATTTCTTCCAATTCATCT---TTGGCGGCG 9994 | || ||||||||||| ||||| | ||||| || | | || ||| ||||| || Sbjct 441847 ACCTTTCAGGTTGCTTCAAGAAGCT-CACAA--ACTCCATAATC-TCTAGCTTGGCCTCG 441792 Query 9995 TCAATCCCCTCAACATCGGTAAAC 10018 || || || |||| |||| |||| Sbjct 441791 TCCATTCCTGCAACGTCGGCAAAC 441768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260216739200