Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq12 138 3e-27 seq18 129 2e-24 seq76 93.3 1e-13 >seq12 Length=2460794 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||| || || |||||||| ||| |||||||| || || || Sbjct 54710 CATACCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTC 54651 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || ||||| || ||||||||||| || || ||||| || || Sbjct 54650 GCTCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGG 54591 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || ||||| || || | ||| || | ||| Sbjct 54590 CGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTC 54531 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 54530 CACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || |||||||| || || || || || ||| | || || ||||| Sbjct 55147 AGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCATCC 55088 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||||||||| ||||| | || ||||| || || ||||| || || || ||| Sbjct 55087 TCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 55028 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || | || || || || |||| || || | ||||| || || || | ||| Sbjct 55027 TGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATCGTC 54968 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || ||||| ||||| Sbjct 54967 TTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || ||| || || || || || || Sbjct 54482 CATACCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 54423 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || ||||| || || ||||| || || || || || ||||| || Sbjct 54422 GCTCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGG 54363 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| || || | ||||| | || Sbjct 54362 GGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTC 54303 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| || || || || || |||||||| Sbjct 54302 AACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 54252 >seq18 Length=496665 Score = 129 bits (142), Expect = 2e-24 Identities = 410/635 (65%), Gaps = 3/635 (0%) Strand=Plus/Minus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| || || || |||||| | || || || || | ||| || ||||| || || Sbjct 91471 ATTATTGCCAACGACCAGGGTAACCGCACCACACCGTCCTTCGTGGCCTTTACGGACACG 91412 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| ||||||||||| | || || || || | ||| || || | || ||||| Sbjct 91411 GAGCGGTTGATTGGTGATGCCGCCAAGAACCAGGTTGCCATGAACCCCCAGAACACGGTC 91352 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 || ||||| ||||| || ||||| | | ||| | ||| || | || | Sbjct 91351 TTCGATGCCAAGCGTCTGATTGGCCGCAAGTTTGCCGACCCTGAGGTGCAGGCAGACATG 91292 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || ||||| || || | | || | | ||| || || | ||||||||||| Sbjct 91291 AAGCATTTCCCGTTCAAGATCATTG---ACCGCAGTGGCAAGCCTGTCATTGAGGTTGAG 91235 Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 | || || || | || || || ||||| || || || || ||||| | | || Sbjct 91234 TTCAAGGGCGAGAACAAGCAGTTCACCCCCGAGGAGATCTCCTCCATGGTGCTGATCAAG 91175 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 ||| || | ||||| | || | || | || || | | ||||| | ||||| Sbjct 91174 ATGCGCGAGACCGCTGAGTCGTACCTGGGCGGCACCGTCAACAACGCTGTCGTGACTGTT 91115 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 || || || || || || | ||||| || || || || ||||| ||||| || Sbjct 91114 CCTGCGTACTTCAACGACTCGCAGCGCCAGGCTACCAAGGACGCTGGTCTGATTGCCGGC 91055 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | || || || | || || || || |||||||| || || ||||| || || ||||| Sbjct 91054 CTCAACGTGCTCCGCATCATCAACGAGCCCACTGCCGCTGCCATTGCCTACGGTCTTGAC 90995 Query 349745 AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGAT 349804 || | | || || || | || || || ||| | || ||||||||||| ||| Sbjct 90994 AAGAAGGTCGAGGGCGAGCGCAACGTGCTGATCTTCGATCTGGGCGGTGGTACTTTCGAT 90935 Query 349805 GTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACA 349864 || || || || || |||| || || || || || || || | || || ||||| || Sbjct 90934 GTGTCGCTGCTGACCATTGAGGATGGTATCTTCGAGGTCAAGTCGACCGCCGGTGACACC 90875 Query 349865 CATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 ||||| ||||| || || ||||| || ||||| || Sbjct 90874 CATCTGGGTGGTGAGGACTTTGACAACCGTCTGGT 90840 >seq76 Length=1205562 Score = 93.3 bits (102), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | |||||||| || ||||| || || Sbjct 846359 CGCGGCACACCCAGCGTCACGTTC---TTGGACGACACACCAGCGAAATGGAAGGTGTTC 846303 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| ||||| ||||| | || || ||||| ||| Sbjct 846302 AGCGTCATCTGAGTAGCAGGCTCACCAATCGACTGAGCTGCCAACACACCCACCATCTCT 846243 Query 377578 CCAGGATTGACAATAGC 377594 ||||||||||| || || Sbjct 846242 CCAGGATTGACCATGGC 846226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252846864240