Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq18 271 8e-68 seq25 111 2e-19 seq11 100 3e-16 >seq18 Length=496665 Score = 271 bits (300), Expect = 8e-68 Identities = 533/783 (68%), Gaps = 4/783 (1%) Strand=Plus/Minus Query 53170 TGGTGAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTA 53229 || |||| ||||||| | | | |||||||| || |||| ||| || ||| | Sbjct 378191 TGTTGAGCGGCCTCAGCACATGATTATGCGCGTGGCTGTGGGCATCTGGGGCGACAATGT 378132 Query 53230 CACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCC 53289 | |||||| ||||| ||| ||| ||| | |||| ||| || |||||| | || Sbjct 378131 CGAGCGTGTTATGGAGACCTACAACTACATGTCCAGCAAGTCCTTCACTCACGCCTCACC 378072 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 || || |||||||| |||||| || ||||| ||||| ||||||||||| | || Sbjct 378071 CACGCTTTTCAACGCCGGTACGCCGCAGGCTCAGCTGTCGTCGTGCTTCCTGGTCGACAT 378012 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 ||||| ||| ||||| ||||| ||||| || |||||| |||||| || ||||| Sbjct 378011 CAAGGACGACAGCATCGAGGGCATTTACGACACCCTCAAGACCTGTGCCATGATTTCCAA 377952 Query 53410 GTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCA 53468 | | | || || || || || || | | | | ||||||| | || | || Sbjct 377951 GACGGCTGGCGGCATTGGCCTCAACATACACCG-CATCCGTGCCACAGGATCCTACATTG 377893 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || |||||| | || | || ||| | || ||||| ||||||||||||||||||| Sbjct 377892 CCGGCACCAACGGCACCTCCAACGGCATCATCCCCATGCTGCGCGTCTTCAACAACACGG 377833 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | || |||||| ||||||| || |||||| || | ||| ||||||||| |||| Sbjct 377832 CTCGCTACGTCGACCAGGGCGGAAACAAGCGCCCCGGCGCTTTCTGCATCTACCTGGAGC 377773 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 |||||||||||||| | | ||||| ||||| ||||| ||| || || | || |||| Sbjct 377772 CGTGGCACGCCGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGA 377713 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 | ||| |||||| ||||| | ||||||||||| || || || |||||| | |||| Sbjct 377712 TCCGCGCCCGTGATCTGTTCATGGCTCTGTGGATACCTGATCTGTTCATGAAGCGCGTGG 377653 Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTC 53767 ||||| ||| ||| || |||||||| | ||||||||| ||||| | | || | Sbjct 377652 AGAAGAACGGCACCTGGACGCTCATGTGCCCTAGCGAGTGCCCTGGCCTGGCCGACTG-C 377594 Query 53768 TACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAG 53827 ||||| |||||||| | | |||| | ||||| ||||||| | Sbjct 377593 TACGGCGAGGAGTTCGAAGCCCTGTACGAAAAGTACGAGAAGGAGGGCCGTGGCCGCGGC 377534 Query 53828 AAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACG 53887 | ||||||| | || | ||| |||| || || || |||| ||||| || | Sbjct 377533 ACCATCAAGGCTCAGAAGCTGTGGTATGCCATTCTTGAGGCCCAGACCGAGACCGGCAAC 377474 Query 53888 CCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTC 53947 || | |||| |||||||| |||| |||||||||||||||||| | ||| | Sbjct 377473 CCCTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGCACC 377414 Query 53948 ATC 53950 ||| Sbjct 377413 ATC 377411 Score = 129 bits (142), Expect = 6e-25 Identities = 329/490 (67%), Gaps = 17/490 (3%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||| ||||| ||||||| ||||| || || |||||| | |||||| || Sbjct 376903 GGCATCCGCAACAGTCTGCTGATGGCGCCCATGCCGACGGCCTCGACGTCACAGATCCTG 376844 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| || ||||| ||||| ||||||| |||| |||||| || || Sbjct 376843 GGCAACAACGAGTGCTTTGAGCCCTACACCTCCAACATTTACCAGCGCCGTGTGCTGGCC 376784 Query 55598 GGTGAGTT---TGTCATGATCAACAAGCACCT-CGTCAAGGACCTGCAGAAGATCAACAA 55653 || ||||| || ||| | | || || ||| |||||| |||| ||| Sbjct 376783 GGCGAGTTCCAGGTGGTGAACCCCTGGCTGCTGCGT----GACCTGGTCGAGATGAACCT 376728 Query 55654 GTGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATC 55709 |||| | | || |||| || || | ||| | |||| || ||| |||||| ||| Sbjct 376727 GTGGTCCGACAACATGAAGAACCGCATCAT-TGCCG-ACGGCGGTTCCATCCAGAACATC 376670 Query 55710 TGGAGATTCCTCTG-CG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAA 55767 | ||| ||| || ||||| | | ||| |||||| |||||||| | ||| Sbjct 376669 CCCAACATCC-CTGACGAGACCAAGGCGCTCTACAAGACGGTCTGGGAGATCTCGCAGCG 376611 Query 55768 GAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 | | | | | ||| || || ||||| || | ||| |||||||| ||||| || || Sbjct 376610 CACTATTGTGCAGATGGCGGCCGACCGTGGCGCCTTCATTGACCAGTCGCAGTCGCTCAA 376551 Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 ||| |||| | || | ||| |||| | | | |||||||| ||| ||||| Sbjct 376550 CATTCACATGCGCGAGCCGACCATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAA 376491 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCGCAACA 55947 | ||| |||||||| || |||||||| ||||| |||| ||| |||| || | || Sbjct 376490 GCTGGGTCTCAAGACAGGCATGTACTACCTGCGCACCCAGGCCGCGGCCCAGCCCATCCA 376431 Query 55948 GGTGACTGTG 55957 | | |||||| Sbjct 376430 GTTCACTGTG 376421 >seq25 Length=315089 Score = 111 bits (122), Expect = 2e-19 Identities = 307/461 (67%), Gaps = 21/461 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || ||| |||||||||||||| Sbjct 43012 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 43071 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579 ||||||| ||||| | | | | | | |||||| || | ||| ||| Sbjct 43072 AAGTCGAAGGGGTTGGTGACGCGGAAGAC---CTTCTCGTTGCCGAGAGCCACCAGCAGG 43128 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || ||||| || | |||||||||| |||| | | |||||||| || | Sbjct 43129 CGGTCAGCCACGAACTCAATGTACTGCTTCATGAGGGTGGAGTTCATGCCGAGCAGAGCG 43188 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 |||||||| |||||||| | ||||| ||| | || | | | | |||||| || Sbjct 43189 CACGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATG-CGAACGGCA--TCGACAATGATG 43245 Query 74700 T----GAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | || || ||| ||||| || | ||||||| ||| | ||| | || ||| Sbjct 43246 TCCTCGACGACCTGCTTGCTAGGGCGGTTCT---TCAGGTGCGAGAACAGCAGGCA-GGC 43301 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 || || ||| || || || | |||| || || || || | || || || Sbjct 43302 GAAGTCGGTGTGCAGACCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGG 43361 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || || |||||||||| ||| ||||||| |||||| ||||||||||||||| || Sbjct 43362 CATCAGGCCTCGCTTCTTCAGCCAGAAGATGGACGAGAAGGCACCACTGAAGAAGATACC 43421 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 || ||| || || ||||| | ||| || || || |||| Sbjct 43422 CTCAACAGCAGCGAAAGCGACCAAGCGCTGAGC-AAAGGTG 43461 >seq11 Length=676853 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 || |||||||||||||||| ||| |||||||| ||||| | |||||| | |||||| Sbjct 366978 CGCGTGAAAATGTAACGAGCGCTGGCAGCATCTGAACCACCCGAAAGACGGGAACCGAAG 366919 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 | ||||| ||||| | | || | |||||||| ||| |||||||| || |||| | | Sbjct 366918 TTACCACTGGGCTCTAGGCAATTGACGTTGTTGGAGCCGACAAAGTTCTGGGCCAGGCCG 366859 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATA 117459 ||||| || || | | ||| ||||| ||||| || Sbjct 366858 ACAATGGTTTGATGCAAGGACGCATCACCGTGGTGGTA 366821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215452784000